Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a22
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 183 1e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.5
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.5
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7) 29 3.5
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 4.7
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 8.2
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 183 bits (445), Expect = 1e-46
Identities = 84/111 (75%), Positives = 99/111 (89%)
Frame = +3
Query: 9 YVFLFKGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSG 188
Y++ +GRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SG
Sbjct: 18 YLYCSRGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASG 77
Query: 189 DMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 341
DM++ATVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 78 DMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 72 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 164
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 72 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 164
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
Length = 201
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 397 CGRVLPQTRALSLEYTFKISSC 462
CGR +P RA+ +Y K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 356 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 225
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 169 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 26
SLF++ T T AP L + APT P ++ AP PP P
Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 347 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 225
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 155 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 57
T + + +I CP VVG V+ CS W T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 65 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 202
P S SS+ R +H+GK S RSP T G HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 379 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 239
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = -1
Query: 223 GLPFLTVATIMSPEPAAGSLFRRPLIPWT----AITYRF-FAPVLSAQLITAPTGRPREI 59
G +T ++ +P + F +P P T A T+ F P + +Q +TAPT + ++
Sbjct: 703 GYAEVTASSAPAPHQVQPAFFFKPPAPTTTSTAAPTFSFGIKPAVESQSLTAPTFQFQQA 762
Query: 58 RNFAPAEPPRPLN 20
++PP N
Sbjct: 763 SAGPQSQPPSTFN 775
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,438
Number of Sequences: 59808
Number of extensions: 399660
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -