Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a22
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 232 1e-61
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 232 1e-61
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 232 1e-61
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 53 1e-07
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 53 1e-07
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 49 3e-06
At2g31010.1 68415.m03781 protein kinase family protein contains ... 29 1.7
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 29 1.7
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 2.2
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 3.8
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family... 27 8.8
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 27 8.8
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 232 bits (567), Expect = 1e-61
Identities = 102/128 (79%), Positives = 121/128 (94%)
Frame = +3
Query: 24 KGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
+GRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A
Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63
Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
TVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ K
Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGK 123
Query: 384 ECADLWPR 407
ECADLWPR
Sbjct: 124 ECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 232 bits (567), Expect = 1e-61
Identities = 102/128 (79%), Positives = 121/128 (94%)
Frame = +3
Query: 24 KGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
+GRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A
Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63
Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
TVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ K
Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGK 123
Query: 384 ECADLWPR 407
ECADLWPR
Sbjct: 124 ECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 232 bits (567), Expect = 1e-61
Identities = 102/128 (79%), Positives = 121/128 (94%)
Frame = +3
Query: 24 KGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 203
+GRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++A
Sbjct: 4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMA 63
Query: 204 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAK 383
TVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ K
Sbjct: 64 TVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGK 123
Query: 384 ECADLWPR 407
ECADLWPR
Sbjct: 124 ECADLWPR 131
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 53.2 bits (122), Expect = 1e-07
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +3
Query: 72 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 242
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100
Query: 243 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 386
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 53.2 bits (122), Expect = 1e-07
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +3
Query: 72 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 242
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101
Query: 243 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 386
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 48.8 bits (111), Expect = 3e-06
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = +3
Query: 72 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 242
+ +G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV
Sbjct: 49 IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102
Query: 243 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 356
+P VV+R P R DG + F+DNA V+V K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At2g31010.1 68415.m03781 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 775
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 18 LFKGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAV 140
LFK + G + R+ +GLP +NC D+ K++ VI V
Sbjct: 190 LFKVLADTVGLESRLVVGLPSDGTVNCMDSN--KHMSVIVV 228
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 332 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 162
D+ +++L+V + +E F + PD+ ++ FPE T+FD + G +
Sbjct: 91 DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150
Query: 161 QATFDTLDSDHIQILC 114
F DSD +C
Sbjct: 151 DVGFHVEDSDITLNVC 166
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 248 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 159
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 320 RIVLKVYKYSITPSERFPLPDDHCRHYL 237
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 615
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 204 WPQSCPRNRPPAVCSGDL*YLGQRSHTD 121
WP S + + P +CS + Y+ SH D
Sbjct: 96 WPTSGGKEKTPYICSSPIKYMYCNSHPD 123
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 112 PVLSAQLITAPTGRPREIRNFAPAEPPRPLNRKT 11
P+ Q T P P +++N P+ PP P +KT
Sbjct: 250 PIPVKQSATPPPPPPPKLKNNGPSPPPPPPLKKT 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,669
Number of Sequences: 28952
Number of extensions: 265846
Number of successful extensions: 846
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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