Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a21
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    32   0.45 
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701...    29   3.2  
10_08_0210 - 15874289-15875663,15878248-15879263                       29   3.2  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   5.5  
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892...    28   7.3  
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    27   9.7  

>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 LPFTLILSLIKSSTM*WKKVTNDWLVNSLRKHSKISKGNKLNDTIW 398
           L   L++SLIK +   WK+  ND  +N+   H  + +G K   T W
Sbjct: 131 LSLVLLVSLIKEAFEDWKRFQNDMSINN--AHVDVLQGQKWETTPW 174


>11_06_0247 -
           21669299-21669348,21669673-21670012,21670110-21670199,
           21670280-21670339,21670564-21670856,21671176-21671245,
           21671623-21671970,21673188-21673318,21673418-21673901,
           21674839-21675558
          Length = 861

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +2

Query: 176 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKA 355
           E+Q +L A S   +R   PV+ PTV+ T     +   +K  N + E    ++ R +    
Sbjct: 490 EEQARLNAASSFSSRTEAPVE-PTVAGTLGETLE-ANSKYGNKLDENYENKMTRTVEAAR 547

Query: 356 FENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 466
             ++ RK   +  LA    EKA+  L   +   K  E
Sbjct: 548 HADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTE 584


>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 75  ASIHLQEHYQNSKFEIMRRRQAFQTIIKIQYLEKKIK*NSLQIRI*R 215
           +SIHL +  + +  + +R     Q ++   YLE+ I  NSL+IR+ R
Sbjct: 473 SSIHLSQQVKEAVVDSLRN-SVRQNLVLNNYLEQAISKNSLRIRLVR 518


>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 IRNYAKATSFPDYYQNPIFRK 175
           ++N +KA SFP+ Y+NP   K
Sbjct: 567 VQNLSKALSFPESYENPYLMK 587


>03_02_0747 +
           10888358-10888481,10888529-10888609,10889011-10889227,
           10889350-10889460,10889615-10889660,10889744-10889853,
           10889926-10890429,10891466-10891594,10891934-10892230,
           10892322-10892680,10892968-10893016,10893124-10893184,
           10893429-10893578,10893659-10893796,10894525-10894805,
           10895005-10895050
          Length = 900

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 419 AKIELNPKDILYKAVENCKPLLQLQP 496
           AK+E++P+DI+Y  +EN +P+   QP
Sbjct: 407 AKVEVSPRDIVY--MENAEPINGEQP 430


>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 65  KNSSFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATVPVK 238
           KNSS NSS+   S     N + +     ++Q P+ + E   +  A +     ATVPVK
Sbjct: 387 KNSSSNSSSSGASSASKNNSSHSGYHHHHHQKPLVKAEPNDQSAAAT---TAATVPVK 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,996
Number of Sequences: 37544
Number of extensions: 325980
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)