Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a21
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07696.1 68415.m00947 ribosomal protein S7 family protein con...    48   4e-06
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ...    33   0.21 
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    31   0.65 
At5g20640.1 68418.m02452 hypothetical protein contains Pfam prof...    30   1.1  
At5g06970.1 68418.m00789 expressed protein                             30   1.1  
At4g23020.1 68417.m03320 expressed protein  ; expression support...    30   1.5  
At2g43945.1 68415.m05462 expressed protein                             30   1.5  
At3g48640.1 68416.m05310 expressed protein                             29   2.0  
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi...    29   2.0  
At4g28360.1 68417.m04059 ribosomal protein L22 family  protein         29   3.5  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    29   3.5  
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    28   4.6  
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    27   8.1  

>At2g07696.1 68415.m00947 ribosomal protein S7 family protein
           contains Pfam profile PF00177: Ribosomal protein S7p/S5e
          Length = 148

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 28/87 (32%), Positives = 45/87 (51%)
 Frame = +2

Query: 323 KRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIK 502
           K L ++LV    +  KR ++ R  +  T    A+ E +   ++  AVEN KP+ ++  + 
Sbjct: 9   KLLIKKLVNFRMKEGKRTRV-RAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVG 67

Query: 503 RGGITYQVPGPITEKRSLFLAIKWLLE 583
             G  Y VPG +   R   LAI+W+LE
Sbjct: 68  VAGTIYDVPGIVARDRQQTLAIRWILE 94


>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 109

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 80  NSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSET 259
           N   + L   +I +  + +S     +  +F+K ++V L+ DSD+      P + PTV  T
Sbjct: 16  NMGRKKLKLKRIESLKERSSKFSKRKKGLFKKAEEVALLCDSDIMLIVVSPTEKPTVFNT 75

Query: 260 SSVYFDPLVNK 292
            S  F  ++ +
Sbjct: 76  RSRSFHTILER 86


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
 Frame = +2

Query: 56  RRLKNSSFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATV-- 229
           R+ K S  N    T+   Q+  Y       DY+++   R+E+ V+   DS  K +  +  
Sbjct: 39  RKRKESLENVKEETVGAAQLLGYDLVEKASDYHESKNLRREEHVE---DSSRKEKEAISR 95

Query: 230 --------PVKPPTVSETSSVYFDPLVNKVIN-HVMEKGNKRLARQLVEKAFENIKRKQI 382
                   P+K   V   + +    LV KV++ H  EKG  R  +   E+   +  RK+ 
Sbjct: 96  CREEKIEKPMKEDPVG-AAQLPDKNLVEKVLDCHESEKGYDRSEKLSHEELVMDSSRKKE 154

Query: 383 ERYHLASTPEEK 418
           E   ++S+ EEK
Sbjct: 155 EA--ISSSREEK 164


>At5g20640.1 68418.m02452 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 215

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 191 LIADSDLKNRATVPVKPPTVSETSSVYFD---PLVNKVINHVMEKGNKRLARQLVEKAFE 361
           L+ +S +K    V  KPP +S T + Y +       +  N +M+   K +A+  +EK  E
Sbjct: 119 LVQNSSIK--ILVHGKPPKISSTRNNYVEIKGSFAERACN-IMDSDGKAIAKVRIEKEME 175

Query: 362 NIKRKQIERYHLASTP 409
            +   + + YH+   P
Sbjct: 176 EMVGNKKDLYHVIVKP 191


>At5g06970.1 68418.m00789 expressed protein
          Length = 1101

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 354  HSKISKGNKLNDTIWLLHQKKKPK*S*ILRTFYIKPLKIANHCYNYSPSR 503
            H  +S+ +KL D++WL    KKP+   ++R   ++  K  N   ++  SR
Sbjct: 854  HYAVSQLSKLEDSMWLRWIAKKPREKIVIRKSMVEKSKSFNQKESFEGSR 903


>At4g23020.1 68417.m03320 expressed protein  ; expression supported
           by MPSS
          Length = 439

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
 Frame = +2

Query: 146 DYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNK 325
           DY  + I  +EDQ ++ A     NR    VK   + E + +    +V+ V+    ++ N 
Sbjct: 306 DYKSHIIEIEEDQSEIRA-----NRLFALVKSRIIEEQNQLLASHVVDNVLLDFFKENNN 360

Query: 326 RLAR---QLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQP 496
              R   +LVE   E + R+Q + Y++  + +   K E+  K++ +  +   +    ++ 
Sbjct: 361 NETRDEDKLVEIVEEWVMRRQDDEYNMFMSWKVSEKREIYVKEMKWGCINGDEKEYVVEE 420

Query: 497 IKRGGIT 517
           +  G +T
Sbjct: 421 LGNGFLT 427


>At2g43945.1 68415.m05462 expressed protein
          Length = 289

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = +2

Query: 50  FYRRLKNSSFNSSTRTLSKLQIRNYAKATS--FPDYYQNP-----IFRKEDQVKLIADSD 208
           F RRL +SS  SS   L   + R+Y++  +   P++ +N      +  K+D ++ + +SD
Sbjct: 41  FKRRLSSSSCCSSQSQLFSGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESD 100

Query: 209 LKNRATVPVKPPTVSETS 262
             +   +P +   + E S
Sbjct: 101 EDSGLRIPTQAQAIVEGS 118


>At3g48640.1 68416.m05310 expressed protein 
          Length = 224

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
 Frame = +2

Query: 74  SFNSSTRTLSKLQIRNYAKATSFPD---YYQNPIFRKEDQVKLIADSDLKNRATVPVKPP 244
           S+N   ++++ L + N  K  +  +   Y +  + +   QV +  D    N   V  K  
Sbjct: 33  SWNEGLKSIANLYLENTTKTLNLFEKFMYTEEVVTQYVCQVNVYWDHVTTNWDHVTTKTR 92

Query: 245 TVSETSSVYFDPLVNKVIN----HVMEKGNKRLARQLVEKAFENIKRKQIERY 391
            +SE   +Y D    +  +    HVM  G  R    ++EK +++ KRK+I ++
Sbjct: 93  KLSE-KFMYTDEFATQYESVYRDHVMLLGKIRELEVVLEKKYKHAKRKRIMKF 144


>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminus)
          Length = 961

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 275 DPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEK 418
           D   N V  HV+E+G     RQ++EK   N+   Q+ ++  AS   EK
Sbjct: 820 DQYGNYVTQHVLERGKPDERRQIIEKLTGNV--VQMSQHKYASNVVEK 865


>At4g28360.1 68417.m04059 ribosomal protein L22 family  protein
          Length = 271

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +2

Query: 56  RRLKNS-----SFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNR 220
           RR+KNS     +++SSTR L     + Y ++   P Y   P++    Q+ +     L+  
Sbjct: 17  RRVKNSHISTANYSSSTRNLESPFSQGYLQSLLRPSYSSRPLYHHLQQLGISTSRQLQ-A 75

Query: 221 ATVPVKPPTVS 253
           +  PV  P  S
Sbjct: 76  SEEPVSSPLSS 86


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 329 LARQLVEKAFENIKRKQIERYHLASTPEEKAKIELN 436
           ++R+   KA + +KRKQ+ R  +A+   E+AK +LN
Sbjct: 33  MSRKEKRKAMKKLKRKQV-RKEIAAKEREEAKAKLN 67


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = +2

Query: 155 QNPIFRKEDQVKLIADSDLKNRATVPVKP-PTVSETSSVYFDPLVNKVINHVMEKGNKRL 331
           Q+ +   E Q+     SD+  R+  P++P P  +E +       V K +   ++K +  +
Sbjct: 592 QSKVKDLESQLSKALKSDM-TRSRDPLEPQPRAAENT--LDSSAVTKKLEEELKKRDALI 648

Query: 332 AR--QLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDI 448
            R  +  EK F+ +  K +      S+P  KA   + P D+
Sbjct: 649 ERLHEENEKLFDRLTEKSVASSTQVSSPSSKASPTVQPADV 689


>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 DQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAF 358
           +Q K    SD    +T P  PPT  + + VYF   ++   + V+E G+  L++    K F
Sbjct: 356 NQKKRTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIE-GSVTLSQSKENKRF 414

Query: 359 ENI 367
            NI
Sbjct: 415 MNI 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,337
Number of Sequences: 28952
Number of extensions: 295904
Number of successful extensions: 846
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)