Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a19
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    99   8e-22
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    86   6e-18
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    73   6e-14
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.0  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   5.0  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   6.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 98.7 bits (235), Expect = 8e-22
 Identities = 44/88 (50%), Positives = 60/88 (68%)
 Frame = +1

Query: 409 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVI 588
           + GD + MHYTGTL +G +FDSS+ RG+P    +G GQ+I+GWD+G+  M  GE+ KL I
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 589 PPELAYGSAGAPPKIPKSATLTFHVELV 672
            P+  YG  G P  IP ++TL F VEL+
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVELL 105


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 41/87 (47%), Positives = 57/87 (65%)
 Frame = +1

Query: 415 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPP 594
           G  + M Y G L++G  FD +  +G P  F LG G+VI+GWD G+ GM EG +RK+ IP 
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333

Query: 595 ELAYGSAGAPPKIPKSATLTFHVELVK 675
            +AYG+    P IPK++TL F V+LV+
Sbjct: 334 PMAYGNQSI-PGIPKNSTLVFEVKLVR 359


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 38/81 (46%), Positives = 50/81 (61%)
 Frame = +1

Query: 430 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYG 609
           M Y G L +G  FD +I  G P TF LG  +VIKGWD G++GM  G +R + IP  +AYG
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG 339

Query: 610 SAGAPPKIPKSATLTFHVELV 672
           S    P IP ++ L F V+L+
Sbjct: 340 SKRL-PGIPANSDLVFDVKLL 359


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 241 NTDFLT*LHSLFNCYKTLLNTKMRFKSTLNVP 146
           +TD +  L  + NCY  + N K + +ST N P
Sbjct: 582 DTDSIDVLEDIDNCYSKVFNKKSKRESTSNEP 613


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 595 ELAYGSAGAPPKIPKSATLTFHVE 666
           EL Y  AG PP +PK A    H++
Sbjct: 86  ELDYNKAGDPPILPKQAKDDHHIK 109


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 639 LWYLWWCSS*TISQFRWNDKFTLFSF 562
           ++YLW CS    SQF   + FT+  F
Sbjct: 30  MYYLWACSKFNDSQFIKPESFTIAGF 55


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 618 STTKDTKVCYSYF-SRRIGEKLXRKR*IIIVSTDKYIYXVLN 740
           +T K T +C   F +  +  KL RKR + ++    Y+Y + N
Sbjct: 71  NTKKSTTICELTFPTPLLAVKLNRKRLLAVLEEQIYVYDISN 112


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 464 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 586
           NL+ Q+ +E+    S LVL K LR+ ++  LE  K   ++ S
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,054
Number of Sequences: 5004
Number of extensions: 45729
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)