Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a19
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 126 3e-29
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 31 0.070
SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9) 29 3.0
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21) 29 4.0
SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08) 29 5.3
SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03) 28 7.0
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 126 bits (303), Expect = 3e-29
Identities = 62/114 (54%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = +1
Query: 358 KLQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGW 537
+L+I + +PE C+ K+ GD L MHYTG L +G +FDSS+ RG F LG G VI+GW
Sbjct: 26 ELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGW 85
Query: 538 DQGLLGMCEGEQRKLVIPPELAYGSAGAPPKIPKSATLTFHVELV--KNXKEKD 693
+QGLL MC GE+RKL IPP LAYG GA IP ATL VELV + KE D
Sbjct: 86 EQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESD 139
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 91.9 bits (218), Expect = 5e-19
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Frame = +1
Query: 340 ESTASKKLQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIP--RG-NPLTFKL 510
E + K+++ P DC K++ GD + +HYTG + DG+ FD++ +G P F +
Sbjct: 93 EEDPNAKIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTI 152
Query: 511 GSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYGSAGA---PPKIP-KSATLTFHVEL 669
G G VIKG++QG+ GMC G++RK+VIPP LAYG G+ P + + TLT+++EL
Sbjct: 153 GGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 31.5 bits (68), Expect(2) = 0.070
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 415 GDLLHMHYTGTLDD----GTEFDSSIPRGNPLTFKLGSGQVIKG 534
GD + + YTG L + G FDS+ FK G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165
Score = 22.2 bits (45), Expect(2) = 0.070
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +1
Query: 616 GAPPKIPKSATLTFHVELVKN 678
G P ++P + L F VE++++
Sbjct: 165 GIPGRVPSESPLLFEVEVLRH 185
>SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)
Length = 110
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 532 GWDQGLLGMCEGEQRKLVIPPELAYGSAGAPPKIPKSATLTFHVELV 672
G D G+ M +GE + + E + G P++P AT+ + VEL+
Sbjct: 5 GLDIGVSTMRKGELSRFLFDKEYVFKDLGCEPRVP-GATVMWEVELL 50
>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
Length = 1332
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 361 LQIGIKKRPEDCSIKSRKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVI 528
L I P S+ SR+G ++ T T + G F ++ G+ L F + QV+
Sbjct: 147 LSANISLVPNSVSVLSREGTVIGELRTKTANPGETFTYTLTNGDNLPFAIKDDQVV 202
>SB_54836| Best HMM Match : Chlam_PMP (HMM E-Value=7.9e-08)
Length = 598
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 663 YVKSKSSRLWYLWWCSS*TISQFRWNDKF 577
YV S SS LW W RWNDKF
Sbjct: 555 YVSSLSSCLWDEEWPHYNISQSLRWNDKF 583
>SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03)
Length = 405
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 654 SKSSRLWYLWWCSS*TISQFRW 589
S + + WY WW S + Q+ W
Sbjct: 310 SNTQKRWYAWWVSLDGVKQYTW 331
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 517 QNQV*RLRGYLEELNYQILYRHLKCQCSAYAKDLLCGS*WNSPQ 386
Q+++ LRG ++ L++Q+LY KC+ A L G + + Q
Sbjct: 713 QDEIAILRGQVQLLHHQLLYERHKCEQHAIRNRRLIGKTFKAVQ 756
>SB_39579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 541 QGLLGMCEGEQRKLVIPPELAYGSAGAPPKIP 636
+GLL + +G RK V P + GAPPK P
Sbjct: 29 KGLLRVAKGRPRKHVRPKVHGHLLQGAPPKAP 60
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 541 QGLLGMCEGEQRKLVIPPELAYGSAGAPPKIP 636
+GLL + +G RK V P + GAPPK P
Sbjct: 1781 KGLLRVAKGRPRKHVRPEVHGHLLQGAPPKAP 1812
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,712,509
Number of Sequences: 59808
Number of extensions: 322328
Number of successful extensions: 581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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