Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a18
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    29   0.87 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    28   1.1  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   4.6  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   8.1  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 196 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR 375
           Y QL + Y P+  +   Q+    +   + N Y P + S++ +EI       ++T      
Sbjct: 281 YEQLHDKYFPNLPVDEKQMQWLHDPSPAENSYHPSVESLHAHEIRFGFKGEIITPSQSQT 340

Query: 376 VEVPEVKPQH 405
           + V E    H
Sbjct: 341 IPVNEGLHHH 350


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
 Frame = +1

Query: 187 TNGYTQLSNTYTPSKNIPCN--QLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTS 360
           T  +T L+N +  S++ P +  QL T  +   S    Q      NP ++        L+S
Sbjct: 100 TGSFTPLNNKHLKSQDQPLSDSQLDTGDSPATSETTVQ----DYNP-QVQSYCRPEPLSS 154

Query: 361 PHVHRVEVPEVKPQHNPDAKEPINTNVPHVVNNYF 465
            HV           H+P  + P +   PH  NN +
Sbjct: 155 NHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHNNNY 189


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 393 YFWNFNSVDMRTCQNSAQYDLDDFV 319
           YFW+     +R C N+A    DD V
Sbjct: 490 YFWSAQGKQLRYCGNNAAEGFDDVV 514


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 274 ASNNQYQPLISSINPNEIVKVILSRVLTSPHVHRVEVP 387
           ASN QY P  S IN N  V+V       S   H    P
Sbjct: 84  ASNAQYYPAYSVINGNNSVQVASPAYTVSHSPHSFSNP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,666
Number of Sequences: 5004
Number of extensions: 37436
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)