Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a18
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296...    28   6.4  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   8.4  

>03_02_0990 -
           13028011-13028114,13028182-13028554,13029488-13029631,
           13030389-13030396,13030634-13030711,13030968-13031132,
           13031414-13031471
          Length = 309

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/91 (24%), Positives = 35/91 (38%)
 Frame = +1

Query: 196 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR 375
           Y     ++TP+  + C+Q   A  Y  S  +     S + PN  VK    R    P    
Sbjct: 83  YAFFKPSWTPNTTVTCDQEYQALAYPWSAKETPAYSSMMLPN--VKDYKGRTWLLPLAAY 140

Query: 376 VEVPEVKPQHNPDAKEPINTNVPHVVNNYFI 468
           +  P    Q  P  +   N   PH  N++++
Sbjct: 141 LYNPWSTQQTKPAVRSDFNNYPPHSSNHHWM 171


>05_07_0093 -
           27648656-27648736,27649034-27649147,27649229-27649288,
           27649464-27649687,27649799-27649886,27650326-27650532,
           27650566-27650784,27650903-27651001,27651439-27651504,
           27651654-27651737,27651829-27651888,27652041-27652325,
           27652789-27652836,27652988-27653034,27653442-27653556,
           27653958-27654032,27654227-27654298,27654944-27656124,
           27656613-27656757
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199 TQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR- 375
           +Q ++T  P+  +  ++ + +      + Q + LISS  P  + K  +S  L +P   + 
Sbjct: 96  SQSASTEAPTSKVDASEESESTQSPKPSEQGETLISSTEP-PVSKAEVSEQLATPKTPKS 154

Query: 376 VEVPEVKPQHNPDA 417
           +   E KP H+ ++
Sbjct: 155 LSATEEKPSHSTES 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,635
Number of Sequences: 37544
Number of extensions: 206865
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)