Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a18
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            28   6.5  
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_47130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/88 (27%), Positives = 36/88 (40%)
 Frame = +1

Query: 181 YQTNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTS 360
           ++T  Y Q   T TP+ N+P   L T   Y    +Q +   ++  P    K   +RV   
Sbjct: 16  HRTQMYQQ--GTSTPNTNVPTGYLNTEHKYTNKVSQPEHKYTNRVPQPEHK-CTNRVPQP 72

Query: 361 PHVHRVEVPEVKPQHNPDAKEPINTNVP 444
            H     VP+ + Q         +TNVP
Sbjct: 73  EHKCTNRVPQHRTQMYQQGTSTPDTNVP 100


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 292 QPLISSINPNEIVKVILSRVLTSP 363
           QP +S+  PN++VK  ++ V+T P
Sbjct: 545 QPSVSTTKPNDVVKTHMTSVVTKP 568


>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 553 VNSDENKDKKEQATEP 600
           VNS ENK+KK+QA  P
Sbjct: 189 VNSSENKEKKQQAAPP 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,798
Number of Sequences: 59808
Number of extensions: 249374
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)