Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a18
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    39   0.004
At3g17225.1 68416.m02200 invertase/pectin methylesterase inhibit...    29   2.3  
At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong...    28   5.3  

>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +1

Query: 247 QLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHRVEVPEVKPQHNPDAKEP 426
           +L TA++ + SN +    +  +N  E+ +++  R L +P   R+     +P    +A +P
Sbjct: 389 ELLTAKSSMTSNERKLAGLCPLNAKEVTRLL--RALGAPRDARIYWAGGEPLGGKEALKP 446

Query: 427 INTNVPHVVNNYFIVSPEYLK 489
           + +  PH+ N Y I  P  LK
Sbjct: 447 LTSEFPHLYNKYDIALPLELK 467


>At3g17225.1 68416.m02200 invertase/pectin methylesterase inhibitor
           family protein similar to SP|P83326 Pectinesterase
           inhibitor (Pectin methylesterase inhibitor) (PMEI)
           {Actinidia chinensis}; contains Pfam profile PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 185

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 295 PLISSINPNE-IVKVILSRVLTSPHV 369
           PL SS++P++ + K  LSR+ T PH+
Sbjct: 24  PLSSSLSPSDKVTKTFLSRLCTEPHI 49


>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 607

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 319 NEIVKVILSRVLTSPHVHRVEVPEVKP-QHNPDAKEPINTNVPHVVN 456
           +E+ K I     +  + HR+ VPE KP + NP+    +N    H+ N
Sbjct: 374 SELAKRIKHNNTSYENYHRIYVPEGKPLRDNPNESLRVNVLFQHIQN 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,351
Number of Sequences: 28952
Number of extensions: 182084
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)