Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a17
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    80   4e-16
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    31   0.18 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   5.0  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    25   8.8  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 45/114 (39%), Positives = 61/114 (53%)
 Frame = +2

Query: 269 TVIFLITLTFPAILAMTTGAHRLWAHRTYKASTELRIVLMLLQTLAGVGPIYNWVRHHRL 448
           T+IF I     + L +T G HRLW+HR YKA   L   L      A  G I  W R HR 
Sbjct: 90  TLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRA 149

Query: 449 HHAHFATENDPFDYNQGFAYAHIFTRMRKLSPYQEKLKESIDMSDLENDSVVMF 610
           HH +  T+ DP++  +GF YAH+   +   +P   ++  S D+SDL +D  VMF
Sbjct: 150 HHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS-DVSDLNSDPFVMF 200


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 280 FNNIDISRHTRNDDRSSSTLGAPYLQSKHRIAHCSNA 390
           + N  I   TR + RSS T G P+L S  R  H  +A
Sbjct: 397 YRNNQIGPRTRTEGRSSITEGKPFLSSSLRFEHVPSA 433


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 89  FKKKQVETKMEDGKQAATPAEEINLSNK 172
           FK+ ++ETK    K  AT +E+++L N+
Sbjct: 320 FKQAKLETKKSGNKDHATSSEKLSLGNE 347


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 184 VCFSLVTEIYFLCWS 140
           VC S+ +EIY LCWS
Sbjct: 123 VCRSMGSEIYDLCWS 137


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 356 CKYGAPK--VDELRSSLRV-WREMSMLLKI*PSSI*LHISEGKFHKE 225
           C Y   K  V +L  SL V WR+ + +  + P      ++ GKFHKE
Sbjct: 170 CAYNTSKAGVIQLIKSLAVEWRKFARVNCVSPGYTTSDMTGGKFHKE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,514
Number of Sequences: 5004
Number of extensions: 58521
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)