Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a17
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    32   0.43 
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    31   0.99 
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    30   1.7  
11_01_0148 + 1242454-1242634,1242774-1243648                           30   2.3  
12_02_0652 - 21527768-21528328,21528980-21529738,21530151-215302...    28   9.2  
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235...    28   9.2  

>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 437 HHRLHHAHFATENDPFDYNQGFAYAHIFTRMRKLSPYQEKLKESIDMSDLENDS-VVMFQ 613
           H RLHH +  TE+D F        A  F        Y + ++  +++SDL   S V++  
Sbjct: 401 HRRLHHEYLETESDLFKLKLQKVVASRFVLPDICRSYIDIIERQLEVSDLSMSSRVLLMH 460

Query: 614 KTLYW 628
           +   W
Sbjct: 461 QVTVW 465


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 260 KWMTVIFLITLTFPAILAMTTGAHRLWAHRTYKASTELRIVLML 391
           KW   +FL   T  A L    G HRLW      +S+E  I  ML
Sbjct: 414 KWDFFVFLCMGTTTAFLGAAIGFHRLWTEPIILSSSESWINFML 457


>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 377 IVLMLLQTLAGVGPIYNWVRHHR-LHHA--HFATENDPFDYNQGFAYAH 514
           + + +LQTL G G  Y+W RH + LH +  H A E D       F   H
Sbjct: 326 VTVSVLQTLLGGGGTYSWGRHGKGLHSSLNHLANEFDQIRSIAAFKDVH 374


>11_01_0148 + 1242454-1242634,1242774-1243648
          Length = 351

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 704 NLILSPPNTRVVRSGATVGTALHT*TSIASFE 609
           N++ +PPN   V S  + GT + + T+ +SF+
Sbjct: 218 NILSAPPNNNAVHSSVSAGTTMTSTTTASSFQ 249


>12_02_0652 -
           21527768-21528328,21528980-21529738,21530151-21530216,
           21530550-21530598,21530717-21530817,21531469-21531540,
           21531630-21531746,21531870-21531959,21532224-21532319,
           21532429-21532482,21533210-21533290,21533382-21533581,
           21533677-21533804,21533943-21533995,21534312-21534374
          Length = 829

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 302 AILAMTTGAHRLWAHRTYKASTELRIVLMLLQTL 403
           A+LA T   H   AH T+ A+T++    +LLQ L
Sbjct: 325 ALLASTIAPHPNQAHATFGATTDMPFGSILLQAL 358


>01_07_0126 -
           41222916-41222942,41223120-41223190,41223478-41223560,
           41223587-41223653,41223740-41223848,41224431-41224511,
           41224671-41224940,41225035-41226510,41226832-41226908,
           41227812-41227912,41229397-41229660,41230964-41231136
          Length = 932

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 265 DDGHIFNNIDISRHTRNDDRSSSTLGAPYLQSKHRIAHCSN---AASDFSW 408
           DD   +  I I + TR   +S+STLG+   Q   + A CS+    A +F W
Sbjct: 248 DDIETYQQISIDQTTRA--KSASTLGSDIAQCLAKRARCSSPLKKAGNFDW 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,452,377
Number of Sequences: 37544
Number of extensions: 355586
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)