Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a16
         (268 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9...    25   5.2  

>At3g53760.1 68416.m05939 tubulin family protein similar to
           SP|Q9SC88 Gamma-tubulin complex component 4 homolog
           {Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
           Gamma-tubulin complex component 4 {Homo sapiens};
           contains Pfam profile PF04130: Spc97 / Spc98 family
          Length = 745

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 59  EDDKYFNRFTVRLPCTSV 6
           E+DKYF+R ++R+P   V
Sbjct: 458 EEDKYFSRVSLRMPSFGV 475


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,547,608
Number of Sequences: 28952
Number of extensions: 35619
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)