Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a15
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      133   5e-32
08_02_1181 - 24985963-24986242,24987109-24987197                      132   2e-31
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    112   1e-25
05_07_0169 + 28126467-28127001,28127105-28127286                       28   4.0  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   7.1  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   9.3  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  133 bits (322), Expect = 5e-32
 Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
 Frame = +3

Query: 69  KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 248
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 249 LNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 416
           LNK +WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  132 bits (318), Expect = 2e-31
 Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
 Frame = +3

Query: 75  ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 251
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 252 NKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 416
           NK +WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  112 bits (270), Expect = 1e-25
 Identities = 60/124 (48%), Positives = 79/124 (63%), Gaps = 18/124 (14%)
 Frame = +3

Query: 99  NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 230
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 231 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQT 404
           IR+D +LNK +W+ G+R+VP           ND+ED+  +L++LVT   +P   +KGL T
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132

Query: 405 ENVD 416
           + V+
Sbjct: 133 KVVE 136


>05_07_0169 + 28126467-28127001,28127105-28127286
          Length = 238

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 142 RLCKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKELSEC 2
           R+CK   Y +    +  D     PLGL  ++++     QLR+EL++C
Sbjct: 135 RVCK--TYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKC 179


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 126 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 230
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 39  TKLKITMAKPKGERKGKSAINEVVTREYTVNL 134
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,410
Number of Sequences: 37544
Number of extensions: 201764
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)