Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a14
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 7e-27
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 63 2e-10
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 3e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 4.3
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 28 7.5
SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2) 28 7.5
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 117 bits (282), Expect = 7e-27
Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Frame = +1
Query: 163 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 342
+V+IA AVRTP+ V A+ RA I ++ EV +G V +A G
Sbjct: 9 DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68
Query: 343 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 522
Q PARQA I AG+P VN +C SG+K++ L Q + G +I++AGG ESMS P
Sbjct: 69 QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128
Query: 523 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTA 645
R +G M L+D ++ DGL D +N +HMG AEN A
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVA 170
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
Frame = +1
Query: 337 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 483
+GQAPARQA + AG LP ST CTT+NKVCASGMKSIM AAQ L G+Q +
Sbjct: 1 MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 39.1 bits (87), Expect(2) = 3e-04
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 262 AAIERAGIPKEEIKEVYIGNVCS-ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKS 438
AA+E + + V GNV AN AR I + +P +T TVN++C SG +S
Sbjct: 736 AAMESGKVDPATVDSVIFGNVLQCANDAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQS 795
Query: 439 IMLAAQ 456
I+ AQ
Sbjct: 796 IISGAQ 801
Score = 22.6 bits (46), Expect(2) = 3e-04
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 556 GMQLVDGIVFDGLTDVYNKFHMGNCAENTA 645
G Q+ D + + GLTD+ MG AEN A
Sbjct: 799 GAQMEDTL-WQGLTDMLPGLPMGITAENLA 827
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 299 ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 120
I+S +P + L AT S L+K +E + A A+ T + TLVE + VN
Sbjct: 972 ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027
Query: 119 I 117
+
Sbjct: 1028 V 1028
>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 315 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 458
W+C K PS ++ + F KKY H + +S LW+ Y + + R
Sbjct: 80 WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 315 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 425
WQ + + GP KTSC +C KY++ N CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/102 (26%), Positives = 41/102 (40%)
Frame = +1
Query: 268 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 447
I + GI EEI +V A + + + G PKS +CT+VN+V G+ +
Sbjct: 72 IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126
Query: 448 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 573
G + GG+ F + G G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 599 SVSPSNTIPSTNCIPPYEVSP 537
+++PSNT+P TNC P E +P
Sbjct: 928 ALNPSNTVP-TNCCPSGETTP 947
>SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)
Length = 191
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 322 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 483
VCSA LG +PA+ V FA L T + SIM + +Q ++ +
Sbjct: 67 VCSAELGVSPAKLCVSFAELIIGDSLTVDQAKAQMAIWSIMASNNAIQVWSRPL 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,542
Number of Sequences: 59808
Number of extensions: 411931
Number of successful extensions: 1010
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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