Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a12
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           31   0.61 
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.80 
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       30   1.1  
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)                 30   1.4  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   30   1.4  
SB_18831| Best HMM Match : RVT_1 (HMM E-Value=0.0066)                  29   2.5  
SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)                  29   2.5  
SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    29   2.5  
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  29   3.2  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     28   4.3  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   5.7  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_37722| Best HMM Match : Hydrophobin (HMM E-Value=0.83)              27   7.5  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_32482| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -2

Query: 401 NFLLFSFNGLKIGCFYFFPLFNLWQVRLYTLCFSVFVHFSPKLFAGVIIFEILLAFCVIK 222
           NF  F+  GL + C  ++P   +    L  LCF + V F+ + F G I + + ++F  + 
Sbjct: 58  NFAYFATMGLTVICLQYYPSVMIILQHLAVLCF-ILVAFT-QWFPGKIAYFVGMSFACLW 115

Query: 221 TIFIQTFVR 195
            + ++T  R
Sbjct: 116 LVSVKTQFR 124


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 123 YIKMSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDR 302
           + +M  + + N  +   C+ +++  YKC+  +GF    C+E +   N C    G + K  
Sbjct: 231 HCEMVDMCDMNPCKNGRCVADEKAGYKCVCHSGFVGKNCDENYCVPNPCLN--GGICKSV 288

Query: 303 KAKGIQ 320
             KG Q
Sbjct: 289 ADKGYQ 294


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 198 YKCLDKNGFDHAKCEE--YFENYNTCK 272
           Y C+ K+GF  + CEE  Y   YN CK
Sbjct: 479 YSCICKSGFKGSNCEEADYCGGYNRCK 505


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 165  LNPCLTEQEQSYKCLDKNGFDHAKC 239
            +N C  + E +YKC+ +N F  A C
Sbjct: 3412 INQCTIDDEGNYKCVARNSFGKASC 3436


>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
          Length = 572

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 416 DNERFNFLLFSFNGLKIGCFYFFPLFNLWQVRLYTLCFSVFVHF 285
           D+ER  F L  ++ +K G  +    F LW V L  + F+VF+ +
Sbjct: 172 DHERIPFRLRCYDAVKPGLHWQNKAFLLWTVSLGLVFFAVFIPY 215


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +3

Query: 132 MSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDRKAK 311
           +S LIN   ERL+   T  E    C    G  +A   + F N N  K   G+V+ + K +
Sbjct: 96  LSPLINPEMERLHRIATRTEPEPSCF--AGKKNANHSQTFANENANKNEEGEVFVECKKE 153

Query: 312 G 314
           G
Sbjct: 154 G 154


>SB_18831| Best HMM Match : RVT_1 (HMM E-Value=0.0066)
          Length = 571

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 KSFGEKCTKTEKQRVYNRTCQRLKRGKK*KQP 366
           K+FG+ C+K  K+  + R C   ++  K  QP
Sbjct: 100 KAFGQVCSKCSKKNRFARVCMSTRQDHKASQP 131


>SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)
          Length = 261

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 KSFGEKCTKTEKQRVYNRTCQRLKRGKK*KQP 366
           K+FG+ C+K  K+  + R C   ++  K  QP
Sbjct: 38  KAFGQVCSKCSKKNRFARVCMSTRQDHKASQP 69


>SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 KSFGEKCTKTEKQRVYNRTCQRLKRGKK*KQP 366
           K+FG+ C+K  K+  + R C   ++  K  QP
Sbjct: 46  KAFGQVCSKCSKKNHFARVCMSTRQDHKASQP 77


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 300 CLCTLFPKTFCRCYNFRNTPRILRDQNH 217
           C    F    CR YN+  TP  L D +H
Sbjct: 55  CQARCFMNNLCRSYNYNTTPCQLSDSDH 82


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 153 NAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENY 260
           N E  +PC  + +   +CL++N  D +KC E F+ +
Sbjct: 15  NNEVASPC--DYQPLKECLERNNGDRSKCMEEFQQF 48


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 271 KSFGEKCTKTEKQRVYNRTCQRLKRGKK*KQP 366
           K+FG+ C+K  K+  + R C    +  K  QP
Sbjct: 38  KAFGQVCSKCSKKNHFARVCMSTSQDHKASQP 69


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 147  NKNAERLNPCLTEQEQSYKCLDKNGFDHAKC 239
            NK  E +N CL     S +C +  G    KC
Sbjct: 1200 NKTCEDINECLNSSSCSQRCFNTRGSFSCKC 1230


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 150 KNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDRKAKGIQPYL 329
           K    L  CL E+  S    ++ G + AK  E  +     K  +GK    +K+K  +  +
Sbjct: 403 KELGALKVCLEEERSSKNTPEETGDNEAKTNETPKAEKAKKSVFGKGTLTKKSK--KKAV 460

Query: 330 PEVEERKEIK 359
            E+E+ +E+K
Sbjct: 461 KEIEKDEELK 470


>SB_37722| Best HMM Match : Hydrophobin (HMM E-Value=0.83)
          Length = 123

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 207 LDKNGFDHAKCEE-YFENYNTCKKFWGKVYKDRKAKGIQPYLPEVEERKEIKAAYFKA 377
           L  N F  A C+  Y   YNT +  +GK +   + +G++ +L   + +K +K  + K+
Sbjct: 67  LKVNSFSPACCQTAYSRAYNTYRSLYGKRHVAPRPRGVKKHLQ--KHKKALKKHHKKS 122


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 365 GCFYFFPLFNLWQVRLYTLC--FSVFVHFSPKLFAGVIIF 252
           G  + FPLF +   RL+ LC  F V  HF+ +    V +F
Sbjct: 849 GHVFTFPLFKMADRRLFLLCSAFVVICHFTVEAVFPVPVF 888


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 FCRCYNFRNTPRILRDQNHFYPNICKT 193
           +CRCY +  TP +  DQ+  Y   C T
Sbjct: 539 WCRCYGYTPTPTLPSDQDLLYCCGCGT 565


>SB_32482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 IITPAKSFGEKCTKTEKQRVYNRTCQRLKRGK 351
           +I  AK +GE   K   +R+Y+ + +R KR K
Sbjct: 72  LIELAKDYGEMSKKAAHKRLYSHSTRRKKRRK 103


>SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 181 VRHGFSLSAFLFINLL--ILMYYA*PINLISMKI*CTELYRAIY 56
           VR G  LSAFLFI +L  +       IN+  +K+ C E+   I+
Sbjct: 145 VRQGDPLSAFLFILVLEAVATSVREDINIKGIKVDCKEIKTVIF 188


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 189 EQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDRKAKGIQPY 326
           EQ +K  D NG    K    F+ Y+T KK  G + K+   +  + Y
Sbjct: 572 EQMFKFYDSNGSQEEKIPHAFKGYDTEKK--GYITKENLRQMFKAY 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,478
Number of Sequences: 59808
Number of extensions: 261310
Number of successful extensions: 845
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)