Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a12
(543 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 32 0.23
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 32 0.23
Z81097-6|CAB03173.1| 176|Caenorhabditis elegans Hypothetical pr... 32 0.31
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.2
AF099921-2|AAC68805.1| 145|Caenorhabditis elegans Hypothetical ... 29 2.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.2
Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine re... 29 2.9
Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 5.0
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 28 5.0
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 5.0
Z70782-6|CAA94844.1| 337|Caenorhabditis elegans Hypothetical pr... 27 8.7
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 129 KMSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEE 245
KM + + + C+ E+E+ KC GF A+CEE
Sbjct: 582 KMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSGARCEE 620
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 129 KMSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEE 245
KM + + + C+ E+E+ KC GF A+CEE
Sbjct: 582 KMFRCLKSTCQNGGVCINEEEKGRKCECSYGFSGARCEE 620
>Z81097-6|CAB03173.1| 176|Caenorhabditis elegans Hypothetical
protein K07A1.13 protein.
Length = 176
Score = 31.9 bits (69), Expect = 0.31
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -2
Query: 404 FNFLLFSFNGLKIGCFYFFPLFNLWQVRLYTLCFSVFVHFSPKLFAGVIIFEILLAFCVI 225
F FL+FS N +YFF L + +S+FV F +AG ILL FC
Sbjct: 48 FLFLIFSQN------YYFFAQLGLQLFFMALESYSLFVGFLVVAYAGAFEIIILLVFCGF 101
Query: 224 KT 219
+T
Sbjct: 102 ET 103
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 135 SKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCE 242
S N CL QE + CL +NGF +CE
Sbjct: 222 SPCANHECHNNGTCLVSQEGAATCLCRNGFTGDRCE 257
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 135 SKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCE 242
S N CL QE + CL +NGF +CE
Sbjct: 222 SPCANHECHNNGTCLVSQEGAATCLCRNGFTGDRCE 257
>AF099921-2|AAC68805.1| 145|Caenorhabditis elegans Hypothetical
protein M01E10.3 protein.
Length = 145
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 144 INKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK 272
+N + RLNP T+ + CL F ++ C+ Y + CK
Sbjct: 13 LNDLSSRLNPLATKNVVLHVCLGVRYFPNSACKSYKDAQALCK 55
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 135 SKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCE 242
S N CL QE + CL +NGF +CE
Sbjct: 222 SPCANHECHNNGTCLVSQEGAATCLCRNGFTGDRCE 257
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 135 SKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCE 242
S N CL QE + CL +NGF +CE
Sbjct: 222 SPCANHECHNNGTCLVSQEGAATCLCRNGFTGDRCE 257
>Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical
protein C25D7.10 protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = -2
Query: 395 LLFSFNGLKIGCFYFFPLFNLWQVRLYTLCFSVFVHFSPKLFAGVIIFEILLAFCVIKTI 216
L F + CF F N Q+ YTL ++ +P + + +L+A + +I
Sbjct: 119 LTFDTELVYFSCFIIF--MNTGQLVFYTL--QNYLVLTP-----LKMLILLIATSSLNSI 169
Query: 215 FIQTFVRLFLFCKTRIQSLGVFIY*FTHFN 126
F+Q + +F+F + +L I + HFN
Sbjct: 170 FLQILLSIFVFPYFEVVTLSTIISFYIHFN 199
>AF024498-7|AAF39806.2| 279|Caenorhabditis elegans Serpentine
receptor, class x protein104 protein.
Length = 279
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 401 NFLLFSFNGLKIGCFYFFPLFNLWQVRLYTLCFSVFVHFSPKLFA 267
+ LL SF G+ I + F+ L + Y LC S + S LFA
Sbjct: 14 HMLLVSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFA 58
>Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical
protein H03A11.1 protein.
Length = 512
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 321 VVYPLLFCLCTLFPKTFCRCYNFRNTPRILRDQNH 217
++ PL C C L P TF NF +TP+ L H
Sbjct: 402 IILPLRQC-CILRPSTFQTLMNFYSTPKSLTKALH 435
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 KLINKN-AERLNPCLTEQEQSYKCLD-KNGFDHAKCEEYFE---NYNTCK 272
+L+NK E N CL S +C D K+GF C+E +E + TCK
Sbjct: 1428 QLVNKTKCEPENECLDSSSCSQRCKDEKHGFT-CSCDEGYELDVDKRTCK 1476
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKF--WGKVYKDRK 305
+R PCLT+Q S ++ D+ C ++ +++C + G+ Y+ RK
Sbjct: 780 KRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSCSQSCGGGRRYRIRK 830
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKF--WGKVYKDRK 305
+R PCLT+Q S ++ D+ C ++ +++C + G+ Y+ RK
Sbjct: 780 KRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSCSQSCGGGRRYRIRK 830
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 KLINKN-AERLNPCLTEQEQSYKCLD-KNGFDHAKCEEYFE---NYNTCK 272
+L+NK E N CL S +C D K+GF C+E +E + TCK
Sbjct: 1428 QLVNKTKCEPENECLDSSSCSQRCKDEKHGFT-CSCDEGYELDVDKRTCK 1476
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 IKMSKLINKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDRK 305
I++ +L+N+ + LT+++ L N A+CEE + + VY +
Sbjct: 560 IELCRLLNQKCS--HDKLTDKQFEDIALLMNAALQAECEEDKDGVVRSLMYLSNVYSRKV 617
Query: 306 AKGIQPYL-PEVEERKEIKAAYF 371
A+G+Q Y+ V+E K K F
Sbjct: 618 AQGMQQYMYTAVQEHKVWKNQRF 640
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKF--WGKVYKDRK 305
+R PCLT+Q S ++ D+ C ++ +++C + G+ Y+ RK
Sbjct: 780 KRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSCSQSCGGGRRYRIRK 830
>Z70782-6|CAA94844.1| 337|Caenorhabditis elegans Hypothetical
protein R04B5.8 protein.
Length = 337
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 321 VVYPLLFCLCTLFPKTFCRCYNFRNTPRILRDQNHFYPNIC 199
V YP+ F + LF + F+N ++LR + NIC
Sbjct: 12 VAYPI-FAISVLFSQALLLLLIFKNQTKLLRTMRIYLLNIC 51
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
T05A12.4a protein.
Length = 1622
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 83 LNLHRYKINGSSIIH*NE*INK*KRRETESVSYRTGTVLQMFG*KWF 223
+N++ ++GS I E K RRE E + G + MFG ++
Sbjct: 1542 MNVYHLLVDGSLDIELRETAKKTYRREDEQKGWTIGDIRSMFGINYY 1588
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,699,476
Number of Sequences: 27780
Number of extensions: 222841
Number of successful extensions: 799
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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