Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a09
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.55 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 IHNVNTCDSFSYNTDLGQFRSNSTSNF 183
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 303 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 410
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 415 DFFLISFLVLIFASCLVRALRIARVFLALKSK 320
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 9  SSFNKCIIYGILF 47
          S  + C+I+G+LF
Sbjct: 11 SDVSSCVIFGVLF 23


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 9  SSFNKCIIYGILF 47
          S  + C+I+G+LF
Sbjct: 11 SDVSSCVIFGVLF 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,576
Number of Sequences: 438
Number of extensions: 1651
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)