Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a08
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 29 0.56
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 1.7
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 3.9
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.9
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 9.1
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 9.1
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 9.1
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 25 9.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.1
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 9.1
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 519 DAKKNTFHDAISETQRENNEDFHLNATELLKKHQ 620
+ KKNT ++ + E+ H+ T LLKK Q
Sbjct: 41 EVKKNTVYERYERKLKSKAEELHMPVTNLLKKGQ 74
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 323 DERETPLAGVFCHYETQERS*YQSRRFRRLEEYRNGLR 436
+ER AG F H+ E S FRR +E R R
Sbjct: 362 EERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERR 399
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 291 QEDETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSV-VWKNIEMASGPNSPVQTEQD 467
+ED TK V ++++ + + I L+ ++ NH + +W I + P S + T+++
Sbjct: 1028 EEDITKAVEKRIDITSRASISGAIEALRNDLGQNHDFATEIWNAI---NNPKSDLLTKRN 1084
Query: 468 I 470
+
Sbjct: 1085 L 1085
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 516 DDAKKNTFHDAISETQRENNEDFHLNATELLKKHQYPVE 632
DDAK F D E + E++ EL ++ ++P E
Sbjct: 439 DDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDE 477
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 122 PSGLCRTADPSAETKTTQANLEQEEPPAL 208
P L +DP+++ +EQE P AL
Sbjct: 15 PDALLVNSDPASKVDNVSVKIEQESPLAL 43
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 445 ELGPEAISIFFQTTESP 395
+LGP +SIFFQ + P
Sbjct: 315 QLGPNGLSIFFQKIKDP 331
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 23 EDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQE 193
ED+ ++ + G E Q L SG S PSGL ++PS +T L+ E
Sbjct: 118 EDFGKLLAKEMGEEAAGQVL------SGVGFSIPSGLVPPSEPSKTVSSTTEELQNE 168
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 52 RWCRASPAASS*RNNTVRMTSFNTLWTMSNSRSISRNKNYTSKP 183
RW +P + S +NT + T + +N + IS+++ SKP
Sbjct: 197 RWLEFAPQSFS--SNTNSVNPLQTTFESTNIQEISQSRTKISKP 238
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 8 NCWQHEDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPS--GLCRTADPSAETKTTQAN 181
+CWQH + +A D + + H + S ++P+ +TAD A + + N
Sbjct: 42 DCWQHASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKN 101
Query: 182 LEQ 190
E+
Sbjct: 102 NEE 104
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 510 FTDDAKKNTFHDAISETQRENNEDF-HLNATELLKKHQ 620
F ++A+K FH +S N EDF +L+ + +K Q
Sbjct: 470 FLEEARKQVFHCFLSFIDSYNEEDFSYLSDIGITEKTQ 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,405
Number of Sequences: 5004
Number of extensions: 38516
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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