Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a06
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   0.90 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   4.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.3  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   6.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   8.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   8.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +1

Query: 151 RYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 330
           R+  +S F+  T D      GS     +   +  N++    +          K SG++YL
Sbjct: 67  RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126

Query: 331 NYSPP 345
           +  PP
Sbjct: 127 SRIPP 131


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 124 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 213
           +R FQ  + RY    E   KP  ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 248 RRWLASWCD--CHEPLGTGNSSMVGG 177
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 193 HPWWGA*SDFRHGSDALF 140
           +P+W   SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 188 WMNYQCPKAHGSRT 229
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 6   IRFDYSFSNFNSAYCVIQ 59
           IRF YSF++ N A CVI+
Sbjct: 418 IRFAYSFNDINQA-CVIE 434


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 133 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 261
           F+  +R Y+G   +K  T+D+L V   + Q HH  +  ++  V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,649
Number of Sequences: 5004
Number of extensions: 28938
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)