Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a06
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 27 4.8
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 27 6.3
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 27 6.3
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 27 6.3
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12) 27 6.3
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9) 27 8.3
SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20) 27 8.3
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 27 8.3
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 30.7 bits (66), Expect = 0.51
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 124 SRFFQQT-VRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLL 267
SRF +Q+ VR HG+ H K + D + V + +W+S A +F A+ L
Sbjct: 2 SRFVRQSKVRHVHGD-HAKNDSYDNIRVSENTWESPFCAVNPKFVAISL 49
>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 29.9 bits (64), Expect = 0.89
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Frame = +1
Query: 145 VRRYHGES----HFKPP--TMDELPVPKGSWQSHHDANQRR 249
+RR+ GES H +P T+DEL P+G+WQS + +RR
Sbjct: 838 LRRWPGESRAPNHTRPDLNTLDELK-PEGAWQSGTELTERR 877
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 41 CVLRDTKCIKLTTQRALQ*----KCS*HAKLHLGSSNKQCV 151
C L + C + +R ++ KC A HL S NKQC+
Sbjct: 272 CKLNNGGCAHICAERTIRGHVITKCQCRAGYHLHSDNKQCI 312
>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
Length = 740
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R SH +P T+DE P+G+WQS D +RR
Sbjct: 450 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 484
>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R SH +P T+DE P+G+WQS D +RR
Sbjct: 297 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 331
>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 273
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 157 HGESHFKPPTMDELPVPKGSWQSHHDAN 240
H E+ F+ P D P P G HD N
Sbjct: 85 HPETEFEAPASDTAPPPSGEIPEVHDDN 112
>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
Length = 671
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R SH +P T+DE P+G+WQS D +RR
Sbjct: 369 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 403
>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
Length = 1225
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 209 LGTGNSSMVGGLK*LSPW*RRTVCWKNLDAIWRVTNI 99
L TG++ G+ + + RRT N+DA WR+ N+
Sbjct: 104 LSTGSTISFAGVANILYYNRRTGKTSNIDASWRLPNL 140
>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R SH +P T+DE P+G+WQS D +RR
Sbjct: 585 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 619
>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
Length = 842
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R +H +P T+DEL P+G+WQS + +RR
Sbjct: 687 RESRAPNHPRPDLNTLDELK-PEGAWQSGTELTERR 721
>SB_57514| Best HMM Match : EGF_CA (HMM E-Value=2.4e-20)
Length = 337
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 FKPPTMDELPVPKGSWQSHHDANQR 246
F+ PT+ EL V SW HH N+R
Sbjct: 306 FEKPTLAELKV---SWTKHHHGNRR 327
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 148 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 249
R +H +P T+DEL P+G+WQS + +RR
Sbjct: 567 RESRAPNHPRPDLNTLDELK-PEGAWQSGTELTERR 601
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,567
Number of Sequences: 59808
Number of extensions: 225238
Number of successful extensions: 594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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