Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a06
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 29 1.8
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 29 1.8
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 3.1
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 3.1
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 3.1
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 3.1
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 3.1
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 28 3.1
AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger t... 28 3.1
Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF003389-7|AAC71133.1| 96|Caenorhabditis elegans Bmp receptor ... 27 5.5
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 234 CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 356
C+ L C+P CI Y+ +C+ IR + + +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 234 CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 356
C+ L C+P CI Y+ +C+ IR + + +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 627 YENYNISPICVKQFLHFASQLT 648
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 695 YENYNISPICVKQFLHFASQLT 716
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
protein T05A10.1c protein.
Length = 1692
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 253 YENYNISPICVKQFLHFASQLT 274
>AY389810-1|AAR28682.1| 781|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 781
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 108 YEHFYCSALCVVSFIHFVSRST 43
YE++ S +CV F+HF S+ T
Sbjct: 275 YENYNISPICVKQFLHFASQLT 296
>Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical
protein ZK1307.7 protein.
Length = 436
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 110 HAKLHLGSSNKQCVATMAKVTSSPPPWMNYQCPKAHGSR 226
H K + G +K+C AT + + +M Y P G R
Sbjct: 354 HIKPYSGLGSKRCRATTVRYCDTGSGYMVYDAPNKKGER 392
>AF003389-7|AAC71133.1| 96|Caenorhabditis elegans Bmp receptor
associated proteinfamily protein 2 protein.
Length = 96
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 SRFFQQTVRRYHGESHFKPP-TMDELPVPKGSWQSHHDANQRRFNAVL 264
SRF Q+ H ++ PP T D +PVP S++ + Q +FN L
Sbjct: 13 SRFAQKRHGHGHHVANPGPPCTFDLMPVPFQSYKKVYGELQGKFNTYL 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,203,717
Number of Sequences: 27780
Number of extensions: 172854
Number of successful extensions: 456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -