Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a06
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3) ide...    29   1.3  
At4g21570.1 68417.m03120 expressed protein contains Pfam profile...    29   1.7  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    27   3.9  

>At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3)
           identical to pseudo-response regulator 3 GI:10281008
           from [Arabidopsis thaliana]
          Length = 495

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 272 PKRSTALKRRWLASWCDCHEPLGTGNSSMVGGLK*LSP 159
           P R   LK  W   W  CH   G+G+ S +   K + P
Sbjct: 169 PIRKNELKNLWQHVWRRCHSSSGSGSESGIHDKKSVKP 206


>At4g21570.1 68417.m03120 expressed protein contains Pfam profile
          PF03619: Domain of unknown function
          Length = 294

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 99 FYCSALCVVSFIHFVSR--STHY*NWKN 22
          FYCSA  V+  +HF  +  S H  +WKN
Sbjct: 14 FYCSAFSVLLTLHFTIQLVSQHLFHWKN 41


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 270 WNCIHCCYIRRCKNIRTGLP 329
           W  IHC   R C+ +  GLP
Sbjct: 288 WRRIHCLIRRECRRLEDGLP 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,670,579
Number of Sequences: 28952
Number of extensions: 159607
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)