Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a05
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   4.5  
SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)                28   6.0  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.0  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   GTRAAQRDCARVPACNATAP 60
           G R  QR   RVP CN TAP
Sbjct: 131 GIRRTQRISPRVPTCNGTAP 150


>SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)
          Length = 258

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 97  PAASSDVARPLDWPRY*RDSPRRLATRQTRISIMG 201
           PA+  DV  P   PRY RD  RR + +  RIS+ G
Sbjct: 19  PASLPDVD-PSRLPRYLRDPTRRSSLQPRRISVQG 52


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 504 WGWVCPQARPKVFSDVLAAMDWIR 527


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  WGRVGPVRRPAASSDVARPLDWPR 141
           WG V P  RP   SDV   +DW R
Sbjct: 753 WGWVCPQARPKVFSDVLAAMDWIR 776


>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 936

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 319 YGHSSNDVVLKIPIASFVELLNIARIDNLFSYI*HLYSGI---FACSLS*VHSDMSIDLX 489
           YG  +   + +   + F+ELL I  I  L+ +  HL++ I     C L  + S +  D  
Sbjct: 804 YGFHARSAIFRYCHSGFLELLAICCIVKLYDFPDHLHAAITHTLLCQLIYMESGIDFDAI 863

Query: 490 F 492
           F
Sbjct: 864 F 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,001
Number of Sequences: 59808
Number of extensions: 365160
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)