Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a05
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g...    28   4.9  
At1g26890.1 68414.m03279 hypothetical protein                          27   8.6  

>At1g76130.1 68414.m08841 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative strong
           similarity to alpha-amylase GI:7532799 from [Malus x
           domestica];contains Pfam profile PF00128: Alpha amylase,
           catalytic domain
          Length = 413

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 65  VAGVAWARCDGRRRPATSLGLWTGRATDVTRLDD 166
           V G  W  CD + +P   +G W  RA  VT LD+
Sbjct: 267 VKGQYWRLCDAQGKPPGVMGWWPSRA--VTFLDN 298


>At1g26890.1 68414.m03279 hypothetical protein
          Length = 280

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 525 VNLLATLPAMPKXKID*HITMNLT*TTCKYTAIKMLY 415
           V+LL++ P +   K+D H   NLT  T K + +K L+
Sbjct: 125 VSLLSSSPVLNCLKVDRHKDDNLTKFTVKVSTLKQLH 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,756
Number of Sequences: 28952
Number of extensions: 236015
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)