Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a03
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   2.3  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    27   3.0  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   5.2  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    26   5.2  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 113 PRYSDLDEEDQHLFRAAYDTPSYDHEEQEDNEI 211
           PRY D D E      A + T  YDHE++E ++I
Sbjct: 65  PRYQDPDNEV-----ALFATAPYDHEDEEADKI 92


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +2

Query: 407 YQPTPSHPQY--EQYAGPQYGAPQHGYDPYYGH 499
           Y P P    Y    Y  PQ   PQ GY P  G+
Sbjct: 12  YAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGY 44


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 STFVPSCIRHSQLRSRGTGGQRNIPRQAGLVERRSL 249
           S F P CIRHS+L S     +  + R+  L + + +
Sbjct: 381 SAFCPKCIRHSKLFSLPWPCRHKVNRELKLEKEKEI 416


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 223 LVEGYFVVLLFLVIVAGSVVCSSEQMLIFFVQIRISRHVSW 101
           L +  FVV+ F++   G      + MLI  +++ I RHV W
Sbjct: 105 LRKALFVVISFMLFSGGL-----QAMLILTIKLGIRRHVEW 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,821
Number of Sequences: 5004
Number of extensions: 44314
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)