Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a03
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     31   0.76 
11_01_0038 - 284152-284202,285014-285091,285215-285218,285669-28...    30   1.3  
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    29   2.3  
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30...    29   4.1  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    29   4.1  
06_01_0839 + 6365962-6366798                                           28   5.4  
10_08_0587 - 19012451-19013095                                         28   7.1  

>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 269 SVSPSQPKDRLSTSPACRGIFRCPPVP 189
           S  P+QP   LS+SPA RG  R  P P
Sbjct: 608 SAQPAQPATGLSSSPAARGHLRAHPPP 634


>11_01_0038 -
           284152-284202,285014-285091,285215-285218,285669-285769,
           286642-287151,287550-288032,288668-289156
          Length = 571

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  AVSPRHVPRYSDLDEEDQHLFRAAYDTPSYDHEEQEDNEIS 214
           A SP  V  Y DL E+D   F+   D    D E+ +D E S
Sbjct: 4   ASSPASVQDYPDLQEDDDDDFQDDDDLDDEDEEDDDDQEPS 44


>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 41  YSITMIVKLVIGIL-FLNAVSPRHVPRYSDLDEED-QHLFRAAYD 169
           + +  +V L+IGIL +L A  PR +P    LD++D + L  A+ D
Sbjct: 200 FIMVALVSLIIGILVYLYATDPRKIPGNHLLDDDDYERLHLASKD 244


>12_01_0036 -
           299140-299190,300001-300078,300202-300205,300657-300757,
           301636-302145,302552-303034,303672-304163
          Length = 572

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 92  AVSPRHVPRYSDLDEEDQHLFRAAYDTPSYDHEEQEDNE 208
           A SP  V  Y DL E+D   F+   D    D +E++D++
Sbjct: 4   ASSPASVQDYPDLQEDDDDDFQDDDDDDLDDEDEEDDDQ 42


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 410 QPTPSHPQYEQYAGPQYGAPQ-HGYDPYY 493
           QP P  PQ+  Y  PQ   P  + YDPY+
Sbjct: 74  QPYPPPPQHHAYPPPQPHPPSPYVYDPYH 102


>06_01_0839 + 6365962-6366798
          Length = 278

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 503 ISGRSTGRSRAGVRRIEVQHTVRIVDATALADSDNKSSFCRHL 375
           + GR  G +RAG++R+    +  +  A A AD D   S C  L
Sbjct: 55  LRGRLRG-TRAGIKRLATSTSQALRQAAAAADDDESVSSCSKL 96


>10_08_0587 - 19012451-19013095
          Length = 214

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 200 PPVPRDRSWECRMQLGTNVDLLRPNQNI*ARVLV 99
           PPV  + + +C  +LG  VD LR   +  ARV V
Sbjct: 102 PPVAAEAAGDCASELGDGVDALRRCVDAMARVAV 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,911
Number of Sequences: 37544
Number of extensions: 300918
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)