Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a03
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     29   4.1  
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      28   7.2  
SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  27   9.6  

>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 7/39 (17%), Positives = 27/39 (69%)
 Frame = -1

Query: 244  TAFQQVQLVEGYFVVLLFLVIVAGSVVCSSEQMLIFFVQ 128
            T+ ++V ++  +F++++ ++I+  + + S+  ++IF ++
Sbjct: 1350 TSVERVTIISIFFIIIIIIIIIITTTISSNITIIIFIIK 1388


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 434 YEQYAGPQYGAPQHGYDPYYGH 499
           Y+Q   P+Y + Q+G +P YG+
Sbjct: 481 YQQDYSPEYDSQQYGQEPQYGY 502


>SB_49882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 314 RACSRRGLC*MLLILSVSPSQPKDRLSTSPACRGIFRCPPVPRDRSW 174
           +AC  R  C +   L+    QP  RL   PAC+  F      RD +W
Sbjct: 419 KACESRIPCYVYSRLTKGCHQPALRLRDKPACKHGFDAVAFLRDGNW 465


>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 319 GGEHVRGEGFVKCF*FFQFRLHSPKTAFQQVQLVEGYFVVLLFLVI-VAGSVVCSSEQML 143
           G +H+R E F+ C  +  FR     T F++  L+ G   ++L L++   G      E+  
Sbjct: 185 GLQHIRRE-FIYCV-YDTFR---KITHFKKWDLILGIICIILLLILRKLGKTKWPEEEDE 239

Query: 142 IFFVQIRISRHVSW 101
              +Q RISR V W
Sbjct: 240 EIAIQQRISRKVIW 253


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 404  HYQPTPSHPQYEQYAGPQYGAPQHGYDPY 490
            HY P P  P  +Q  GP++ AP      Y
Sbjct: 947  HYTPPPQTPPNQQDIGPRHYAPPRAPQSY 975


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,390
Number of Sequences: 59808
Number of extensions: 338563
Number of successful extensions: 1067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)