Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a03
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14540.1 68418.m01704 proline-rich family protein contains pr...    31   0.48 
At5g32450.1 68418.m03826 RNA recognition motif (RRM)-containing ...    28   4.5  
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    28   4.5  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    28   5.9  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   7.8  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    27   7.8  
At2g22480.1 68415.m02667 phosphofructokinase family protein simi...    27   7.8  

>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 407 YQPTPSHPQYEQYAGPQYGAPQHGYDP 487
           YQP P  PQY Q   PQ   P  GY+P
Sbjct: 328 YQPPPQQPQYPQQPPPQLQHPS-GYNP 353


>At5g32450.1 68418.m03826 RNA recognition motif (RRM)-containing
           protein various predicted proteins, Arabidopsis thaliana
           and others
          Length = 267

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 175 QLRSRGTGGQRNIPRQAGLVERRSLGCEGETERIKSI*Q 291
           QLR+  +    +  ++ GL E+ S+G     E++KS+ Q
Sbjct: 152 QLRANASAKVSSFDKRVGLTEKLSVGISAVNEKVKSVDQ 190


>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 407 YQPTPSHPQYEQYAGPQYG--AP-QHGYDPYYGH 499
           Y P+P HP      GP +G  AP    YDPY G+
Sbjct: 168 YSPSPFHPPPPPVWGPPHGYMAPAPPPYDPYAGY 201


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 404 HYQPTPSHPQYEQYAGPQYGAPQHG 478
           HY   P H  Y  Y G Q G P  G
Sbjct: 513 HYDNPPMHQSYGGYGGSQQGYPSAG 537


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 407 YQPTPSHPQYEQYAGPQYGAPQHGYDP 487
           Y+PTPS P Y++   P Y +P   Y P
Sbjct: 145 YKPTPSPPVYKK--SPSYSSPPPPYVP 169


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 80   LFLNAVSPRHVPRYSDLDEED-QHLFRAAY 166
            L +N   P H P+++D+ EED +   RA +
Sbjct: 1263 LKINLYKPEHYPKHTDITEEDWEETMRAVF 1292


>At2g22480.1 68415.m02667 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 537

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 533 LISLAVALFRISGRSTGRSRAGVRRIEVQHTVRIVDATALADSDNKSSF 387
           L SL +   R     + RSR  VR  E+QH+     +  L+D D K  +
Sbjct: 29  LTSLILRKSRSPVNPSSRSRVSVRASEIQHSKTSASSIDLSDPDWKLKY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,055
Number of Sequences: 28952
Number of extensions: 240282
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)