Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a02
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    29   0.73 
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    28   1.3  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    27   1.7  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   2.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   3.9  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.0  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 424 YQRGLRNHRPSLQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGR 603
           YQR  ++H+ ++Q +S+Q  +DE   + S E     T D  + ND      P  P V   
Sbjct: 272 YQRHKKSHKGAIQDSSIQSYLDEE-EKLSRE-LDHKTKDASSTNDSQTTPLPPPPPVAVN 329

Query: 604 RSSD 615
            ++D
Sbjct: 330 STND 333


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 493 SPRRFSDETFIPDTDDDEAYNDGPIEETP-TRPVVNG 600
           SPR+ ++++   D     A+ +GP+   P TRPV  G
Sbjct: 548 SPRKATNKSLSMDVSKGNAFENGPLLPRPTTRPVSRG 584


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 848

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +1

Query: 346  TMSGEPTLTESPVPVALARLQGRPGRY-QRGLRNHRPSLQLASLQEAIDESPRRFSDETF 522
            T+S +P +    +     RLQ     Y +R L+  +P L+      +   +  +  DETF
Sbjct: 749  TLSEDPLIKVEELEEKAKRLQELTYEYLRRSLQ--QPKLKAKKGASSSSTAESKVEDETF 806

Query: 523  IPDTDDDEAYNDGPIEET-PTRPVVNGRRSS 612
              D +   A N    +ET  +R  V  R SS
Sbjct: 807  TNDIEPTTALNSTSTQETEKSRASVTQRPSS 837


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 441 AQATLVAPRPTLQTGQSHRHRRL 373
           A+ +++AP P LQ G S + RRL
Sbjct: 179 AEGSIIAPPPPLQPGASRQARRL 201


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 225 CSSL*LNKTKNVQKSCGQAGDLLSLLHWRNEQ 130
           C+S+ L  +K  +K    A  ++S L+W+ E+
Sbjct: 43  CNSVRLVNSKEPEKYVSDANAIVSFLYWKQEE 74


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 496 PRRFSDETFIPDTDDDEA-YNDGPIEETPT 582
           P RFS  +  P   D+E+ ++DGP  E  T
Sbjct: 4   PLRFSTPSSSPSASDNESVHDDGPTTELDT 33


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 451  PSLQLASLQEAIDE--SPRRFSDETFIPDTDDDEAYNDGPIEETPTR 585
            P+   A  +E +++  SP     ++  P   DD+A+ + P+ E P R
Sbjct: 903  PAPPAAPAKEVVEKAPSPPATRPKSTTPQKFDDDAWANKPVTEPPVR 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,798
Number of Sequences: 5004
Number of extensions: 41192
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)