Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a02
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55254| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26) 30 1.3
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 29 2.4
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 29 2.4
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_50693| Best HMM Match : C2 (HMM E-Value=0) 29 3.1
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33) 29 3.1
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) 28 5.4
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 27 9.5
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 27 9.5
>SB_55254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 424 YQRGLRNHRPSLQLASLQEAIDESPRRFSDETFIPDTDDDEA 549
Y R N R + LQEA ++S R E+ IPD DD +A
Sbjct: 29 YARSKVNPRFMISEEQLQEAAEKSEFRHKCESLIPDVDDIKA 70
>SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)
Length = 375
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 478 EAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTR 585
+A E P+R T I T D+ Y+D EETP +
Sbjct: 167 KATVEQPKRSRKRTVIEQTPDENFYDDQDEEETPAK 202
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +1
Query: 439 RNHRPSLQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGRRSSDA 618
++HRPSL + + EA D++ +++ P D N+G + +T + G + +
Sbjct: 49 QSHRPSLPMLDVSEARDDT-IEWTESMATPPRQKDVGINEGELMDTKIKMEEKGTKVART 107
Query: 619 TFA 627
F+
Sbjct: 108 LFS 110
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +1
Query: 439 RNHRPSLQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGRRSSDA 618
++HRPSL + + EA D++ +++ P D N+G + +T + G + +
Sbjct: 190 QSHRPSLPMLDVSEARDDT-IEWTESMATPPRQKDVGINEGELMDTKIKMEEKGTKVART 248
Query: 619 TFA 627
F+
Sbjct: 249 LFS 251
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 451 PSLQLASLQEAIDESPRRFSDETFIPDTDDDEAYND 558
PS Q I ES R+F DE F D+ +DE ND
Sbjct: 56 PSKQRLDKVHMIKESARKFLDEEF-EDSSEDEEIND 90
>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
Length = 1049
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +1
Query: 493 SPRRFSDETFIPDTDD-----DEAYNDGPIEETP-TRPVVNGRRSSD 615
+PR+ S + +PD DD DE D P+ +TP T V NG+ S+
Sbjct: 904 TPRKNSGRS-LPDRDDYWLADDEGQGDSPVSKTPKTTLVANGKSPSN 949
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +1
Query: 430 RGLRNHRPSLQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGR 603
R L +R +L L+ A E SDE D+D D +D EE P P R
Sbjct: 1399 RMLVMYREKRRLEELENAQSEDDAVSSDEEKSGDSDGDSGEDDSSDEEKPAVPRATSR 1456
>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
Length = 774
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 355 GEPTLTESPVPVALARLQGRPGRYQRGLRNHR--PSLQLASLQEAIDESPRRFSDETFIP 528
G + T+S VPV+ ++ + Y +G R+H+ Q +E D++ RR +E I
Sbjct: 509 GATSHTQSTVPVSYSQPMKQDVSYMQGKRDHQIFRGRQNEDCKEKRDKNSRRNREEK-IS 567
Query: 529 DTDDDEAYNDGPI 567
D D + D I
Sbjct: 568 DDSSDTSQTDAKI 580
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 156 KGGRPPVRNSFGRFLFCSITTNYTFICKSYFRQF*YEGAVINMQTP*SEESDKTI 320
KGGRP V N FG+++ ++T + + + F E V + +T + E ++ +
Sbjct: 429 KGGRPVVPNRFGKYIPFTLTPSQLIVPTGFQDNFICEECVRSNETISNVECEQEV 483
>SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 156 KGGRPPVRNSFGRFLFCSITTNYTFICKSYFRQF*YEGAVINMQTP*SEESDKTI 320
KGGRP V N FG+++ ++T + + + F E V + +T + E ++ +
Sbjct: 42 KGGRPVVPNRFGKYIPFTLTPSQLIVPTGFQDNFICEECVRSNETISNVECEQEV 96
>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
Length = 1208
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 343 ITMSGEPTLTESPVPVALARLQGRPGRYQRGLRNHRPSLQLA--SLQEAIDESPRRFSDE 516
+ + G L + + + A L+ G+ R H+P + L+ +++EA+ PR F+
Sbjct: 802 LPLIGNLNLLSNQMHLDFAALEKTYGKIFRVYLAHKPIIVLSGDAIKEALVRQPRNFAGR 861
Query: 517 TFIPDTDD 540
+P T++
Sbjct: 862 PLLPITEE 869
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 457 LQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGRRS 609
L+L S +EA S ++D+ + DDE +++ P E P RRS
Sbjct: 501 LELESPEEAGKVSSDDYTDQETFEEKGDDEEFDNDPRPEDRELPCHKPRRS 551
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 457 LQLASLQEAIDESPRRFSDETFIPDTDDDEAYNDGPIEETPTRPVVNGRRS 609
L+L S +EA S ++D+ + DDE +++ P E P RRS
Sbjct: 459 LELESPEEAGKVSSDDYTDQETFEEKGDDEEFDNDPRPEDRELPCHKPRRS 509
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 361 PTLTESPVPVALARLQGRPGRYQRGLRNHRPSLQLASLQEAIDE 492
P +E P PVA++ +Q P YQ+ R+ S+ +++++A+++
Sbjct: 1216 PVASEVPKPVAVSIVQQTPTSYQK--RHEETSVPGSAVKQAVND 1257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,549
Number of Sequences: 59808
Number of extensions: 337454
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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