Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11a02
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   3.4  
At4g36980.1 68417.m05240 expressed protein                             28   5.9  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    28   5.9  

>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +1

Query: 352 SGEPTLTESPVPVALARLQGRPGRYQRGLRNHRPSLQLASLQEAIDESPRRFSDETFIPD 531
           + E +L +SP PV+ +     P R  RG    R     +        SP R        D
Sbjct: 31  ANEASLPQSPEPVSASEANPSPSRRSRGRGKKRRLNNESEAGNQRTSSPERSRSRLHHSD 90

Query: 532 TDDDEAYNDGPIEETPTRPV 591
           T + +  N G I  T T  +
Sbjct: 91  TKNGDCSN-GMIVSTTTESI 109


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 364 TLTESPVPVALARLQGRPGRYQRGLRNHRPSLQLASLQEAIDESPRRFSDET-FIPDTDD 540
           +++ SP P    R + R G   R  R H    +  S   ++  SP+R +D    I     
Sbjct: 488 SISRSPPPRRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLPG 547

Query: 541 DEAYNDGPIE 570
           +EA   G  E
Sbjct: 548 EEAAGQGTEE 557


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 12  KAPRASHA*ARVCANRSSESLARRFRYDFVCRRLRLVIRFV 134
           K+P+AS +  RVC      S A +FR  F     RL +RFV
Sbjct: 398 KSPKASISPTRVCNKSQKLSTAAKFRRSF--SPSRLAMRFV 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,814
Number of Sequences: 28952
Number of extensions: 221770
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)