Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a01
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 124 9e-30
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 58 5e-10
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 39 5e-04
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 36 0.002
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.003
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 35 0.007
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.013
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 33 0.017
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.017
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 33 0.030
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 32 0.052
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.052
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.091
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 31 0.091
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.12
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.16
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.16
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 30 0.16
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 30 0.16
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.37
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 2.6
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.4
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 3.4
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 4.5
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 5.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 5.9
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 124 bits (298), Expect = 9e-30
Identities = 50/107 (46%), Positives = 66/107 (61%)
Frame = +3
Query: 99 EDCDGMDRGDNDGPKSDKMFTLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQGESKK 278
ED +D+ + + + F +KKWNAVA+W WD+ D CAICR +MD C+ CQ +
Sbjct: 2 EDEMQIDKKEVEIEQKPPRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANT-- 59
Query: 279 DSYGKQDCVVVWGECNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMG 419
DS Q+C V WG CNH+FHF C+S W+ N CPL +EW QR G
Sbjct: 60 DSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYG 106
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 58.4 bits (135), Expect = 5e-10
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 168 KWNAVAMWSWDV-ECDTCAICRVQVMDACLRCQGESKKDSYGKQDCVVVWGECNHSFHFC 344
+++A+A W+WD + D C ICRV C +C +C +VWG+C H FH
Sbjct: 7 RYHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSPG-------DNCPIVWGKCKHIFHAH 59
Query: 345 CMSLWVK---QNNRCPLCQQEWSI 407
C+ W+ +CP+ +Q + +
Sbjct: 60 CIQNWLATSGSQGQCPMDRQTFVV 83
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 38.7 bits (86), Expect = 5e-04
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 315 GECNHSFHFCCMSLWVKQNN--RCPLCQQEWS 404
G C H FH C+ W K +N RCPLC+ ++
Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 36.3 bits (80), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEW 401
C H FH C+ W + N CPLC+ E+
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEF 82
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 243 DACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQ-NNRCPLCQ 392
D+CL C ++Y D C H FH C+ W+ NN CPLC+
Sbjct: 764 DSCLICL-----ETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 34.7 bits (76), Expect = 0.007
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 213 TCAICRVQVMDACLRCQGESKKDSYGKQ-DCVVVWGECNHSFHFCCMSLWVKQNNRCPLC 389
TC ICR ++ + + + + D C H HF C+ W+++ CP+C
Sbjct: 291 TCTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPIC 350
Query: 390 QQ 395
++
Sbjct: 351 RR 352
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 33.9 bits (74), Expect = 0.013
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWV-KQNNRCPLCQ 392
+CNH FH C+ W+ N CPLC+
Sbjct: 543 QCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.5 bits (73), Expect = 0.017
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWVKQNNRCPLCQ 392
EC H F + C++ W + + CPLC+
Sbjct: 270 ECGHIFCWSCINGWTSKKSECPLCR 294
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.017
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQE 398
C H++ + C+ W+K++ CP C+Q+
Sbjct: 100 CGHTYCYECLLNWLKESKSCPTCRQK 125
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 32.7 bits (71), Expect = 0.030
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 279 DSYGKQDCVVVWGECNHSFHFCCMSLW-VKQNNRCPLCQQE 398
+S+ K D VV C H FH C++ W V + CP C E
Sbjct: 326 ESFTKGDKVVAL-PCKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.9 bits (69), Expect = 0.052
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMG 419
C H F C+ W++ + CPLC++E + +G
Sbjct: 127 CGHIFGKNCLQKWLENHCTCPLCRKEVPHETVG 159
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.9 bits (69), Expect = 0.052
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQ 410
C H+FH C+ W N+ CP+C+ +Q
Sbjct: 227 CQHTFHCPCLQKW--GNSSCPVCRYTQKVQ 254
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.1 bits (67), Expect = 0.091
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQ 392
C H FH C+ W++ N C +C+
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAICR 437
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 31.1 bits (67), Expect = 0.091
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQ 392
C H + C+ W+K ++ CP+C+
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 30.7 bits (66), Expect = 0.12
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 306 VVWGECNHSFHFCCMSLWVKQNNRCPLC 389
V++ C+H H C +++ N RCP C
Sbjct: 285 VIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.16
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Frame = +3
Query: 309 VW--GECNHSFHFCCMSLW----VKQNN----RCPLCQ 392
+W G C H FH C+ W ++Q N RCP CQ
Sbjct: 210 IWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 30.3 bits (65), Expect = 0.16
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQ 392
C+H +H C+ W++ + CP+C+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCR 670
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.16
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 321 CNHSFHFCCMSLWV-KQNNRCPLCQQEW 401
C H FH C+ W+ CPLC +++
Sbjct: 223 CEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.3 bits (65), Expect = 0.16
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 321 CNHSFHFCCMSLW-VKQNNRCPLCQQ 395
C+H FH C+ + +K ++ CPLC+Q
Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPLCKQ 542
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 29.1 bits (62), Expect = 0.37
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 321 CNHS-FHFCCMSLWVKQNNRCPLCQQ 395
C H F + C+ W+ Q+ CP+C++
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKR 62
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMGK 422
C+H+F C+ +++++ CP C+ R+ K
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACRAPEQESRLRK 77
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 207 CDTCAICRVQVMDACLRCQGESK 275
C+ CAI R + C++C ++K
Sbjct: 274 CEQCAITRYRKTPTCIQCGADTK 296
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 153 MFTLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQGESKK 278
+ TLK+W +++ W EC + I V + + C G+S K
Sbjct: 13 LLTLKQWEKFSLFQWQ-ECPSIKILHDSVGNK-ISCIGKSTK 52
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 252 DMRPLLARGK*RKYHIQHPNSTLQQHS 172
D PLL++ +KYH +HPN TL S
Sbjct: 323 DEPPLLSQ---QKYHEKHPNVTLSASS 346
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 5.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 129 YPHGPYHHSLH 97
YPH PYHH H
Sbjct: 4 YPHLPYHHHHH 14
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 28 YAFNFQ*LP*IFTINIKTHTLCPVKTVMVWTVG 126
Y F+F +P IF I T ++ +M WT G
Sbjct: 94 YLFHFSDIPLIFGTLIFTCLSAALEPLMTWTTG 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,967
Number of Sequences: 5004
Number of extensions: 49197
Number of successful extensions: 174
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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