Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11a01
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 1e-14
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.007
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 35 0.030
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 35 0.039
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 34 0.052
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 34 0.052
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 33 0.091
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 33 0.12
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 33 0.12
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 31 0.49
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_2843| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_20825| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064) 30 0.85
SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064) 30 0.85
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 30 0.85
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 1.5
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 29 1.5
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 1.5
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 29 2.0
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 29 2.6
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 28 3.4
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 28 3.4
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 28 4.5
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 28 4.5
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 28 4.5
SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40) 28 4.5
SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20) 28 4.5
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 27 6.0
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) 27 6.0
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2) 27 6.0
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 27 7.9
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 27 7.9
>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 76.2 bits (179), Expect = 1e-14
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +3
Query: 141 KSDKMFTLKKWNAVAMWSWDVECDTCAICRVQVM 242
+S KMF+LKKWNA+AMWSWDVECDTCAICRVQVM
Sbjct: 26 ESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 246 ACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQNNRCPLCQQE 398
+C C G+ +K KQ C+H FH C+ W+++ N CP+C+ E
Sbjct: 61 SCPICLGDYEKGESTKQM------PCDHLFHPGCILPWLEKTNSCPVCRHE 105
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 35.1 bits (77), Expect = 0.030
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQ 392
C+HSF C+ W+++ N CP+C+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPICR 409
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 34.7 bits (76), Expect = 0.039
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 204 ECDTCAICRVQVMDACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQNNRCP 383
+C C++ R M C C D + K C ++ C HSFH C+ +W+ +N P
Sbjct: 542 DCLPCSVGRPSWMIPCGECV--ICLDEF-KPGCTLLGLPCGHSFHQHCIEVWLAGDNTAP 598
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 34.3 bits (75), Expect = 0.052
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWVKQNNRCPLCQQE 398
EC HSF CC+ +++ + RCP+C E
Sbjct: 63 ECLHSFCRCCIVRYLETSYRCPVCDAE 89
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 34.3 bits (75), Expect = 0.052
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWVKQNNRCPLCQQE 398
EC HSF CC+ +++ + RCP+C E
Sbjct: 31 ECLHSFCRCCIVRYLETSYRCPVCDAE 57
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 33.5 bits (73), Expect = 0.091
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
Frame = +3
Query: 207 CDTCAICRV--------QVMDACL--RCQGESK-KDSYGKQDCVVVWGE---------CN 326
CD C ICR+ +V + CL R QG+ K +++ G +C + + C+
Sbjct: 1943 CDKCGICRIHKDQSFHCEVCNVCLDVRLQGKHKCRENSGHDECCICLEDAFTGCQVLACS 2002
Query: 327 HSFHFCCMSLWVKQNNR-CPLCQ 392
H H C V+ R CP+C+
Sbjct: 2003 HKVHRDCAVAMVRNGVRNCPICR 2025
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLC 389
C H FH C+ W+ N CPLC
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPLC 254
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 33.1 bits (72), Expect = 0.12
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEWS 404
C H + C+S W++ N CP+C++ S
Sbjct: 280 CGHKYCEPCLSRWLENNTTCPICRKPTS 307
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 32.7 bits (71), Expect = 0.16
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQE 398
C HSFH C + + +N CP+C E
Sbjct: 90 CLHSFHQPCFEGYAENDNECPICTPE 115
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWVKQNNRCPLCQQE 398
EC HSF C+ W++ + CP+C E
Sbjct: 1381 ECLHSFCRSCIVSWLQASYHCPVCDTE 1407
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 228 RVQVMDACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQNNR-CPLCQQ 395
R + D C C D Y + D + + C+H++H C+ W+ + R CP+C++
Sbjct: 294 RDEYYDVCAICL-----DEYKEGDKLRIL-PCDHAYHCKCVDPWLTEGKRTCPVCKR 344
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 31.1 bits (67), Expect = 0.49
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQ 392
C H F C+SLW + CP+C+
Sbjct: 499 CKHIFCEDCISLWFDREQTCPMCR 522
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 318 ECNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMG 419
+C H FH C+ W+ + CP+ Q + MG
Sbjct: 229 QCRHVFHRDCIDSWLATQSICPVDGQTVGVSYMG 262
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +3
Query: 204 ECDTCAICRVQVMDACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQN---- 371
E D C IC+ +++D C + +Y K +G C +S H CM +W +
Sbjct: 75 EEDVCPICQDELLDKC-------EPLTYCK------YG-CGNSVHIKCMKVWAEHQRSTG 120
Query: 372 ---NRCPLCQQEW 401
+CPLC+ ++
Sbjct: 121 EKITKCPLCRVDF 133
>SB_2843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 327 GYIRPKPPHSPASRMSPSCSHPGTEDMRPLLARGK*RKYHIQHPNST 187
G R P SP+S +S + P + L RGK R H+ +PN T
Sbjct: 153 GVCRHLSPSSPSSALSYLAALPCSVGRTALPVRGKERTSHLSNPNRT 199
>SB_20825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 99 EDCDGMDRGDNDGPKSDKM 155
+DCDG D GDNDG D M
Sbjct: 59 DDCDGDDDGDNDGNDDDVM 77
>SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064)
Length = 336
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 306 VVWGECNHSFHFCCMSLWVKQNNRCPLCQQEW 401
VV C HS CC S + N +CP C++E+
Sbjct: 67 VVMPNCGHS---CCSSCAERVNRKCPECREEF 95
>SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)
Length = 349
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 306 VVWGECNHSFHFCCMSLWVKQNNRCPLCQQEW 401
VV C HS CC S + N +CP C++E+
Sbjct: 67 VVMPNCGHS---CCSSCAERVNRKCPECREEF 95
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 216 CAICRVQVMDACLRCQGESKKDSYGKQDCVVVWGECNHSFHFCCMSLWVKQNN-RCPL 386
C + D CL C E Y D + + C H+FH C+ W+ + +CPL
Sbjct: 246 CVTVNEGIDDVCLICMEE-----YAVGDSMK-YLPCRHNFHSACIRTWLTYTSCKCPL 297
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCPLCQQEWSIQRMGK 422
C H F C+ W+ +N CPL ++ +I + K
Sbjct: 72 CGHVFCSQCLVHWIAENGTCPLTCEQLAIDDLKK 105
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 315 GECNHSFHF-CCMSLWV-KQNNRCPLCQQEWSI 407
G+C+H + CC+ + V KQ N C +C+ E S+
Sbjct: 27 GKCDHPVCYKCCVRMRVLKQENYCTVCRSELSM 59
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +3
Query: 321 CNHSFHFC--CMSLWVKQNNRCPLCQ 392
C + FC C+ LW++ N CP C+
Sbjct: 116 CPNQHVFCSPCLDLWLRTNRYCPTCR 141
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 391 NKNGPYSVWENKLCFVLNHM 450
+ GP W+N C VLNH+
Sbjct: 1399 DNQGPRGAWQNSACLVLNHL 1418
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 306 VVWGECNHSFHFCCMSLWVKQNNRCPLCQQEW 401
VV C HS CC + + N +CP C++E+
Sbjct: 41 VVMPNCGHS---CCSTCAKRVNRKCPECREEF 69
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 2 SKQVEHCKCTHLIFNSYLKYLP 67
S+QV HCKC+HL + ++P
Sbjct: 389 SRQVTHCKCSHLTWFGAKLFIP 410
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 28.3 bits (60), Expect = 3.4
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Frame = +3
Query: 132 DGPKSDKMFTLKKWNAVAMWSWDVECDTCAIC-RVQVMDACL------RCQGESKKDSYG 290
DGP D+ TL +W+ + EC + C VQ + C CQ K YG
Sbjct: 122 DGPSCDQACTLGRWDVNC--NNTCECQNNSTCDSVQGICNCTSGWQGDACQLPCKSGYYG 179
Query: 291 ---KQDCVVV-WGECNHSFHFC-CMSLWVKQNNRC 380
KQ C CNH C C+S W RC
Sbjct: 180 NSCKQVCQCQNRSRCNHVTGLCRCISGWT--GKRC 212
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -1
Query: 405 WTILVGRAGIYCSVLPTETCSRNGSYGYIRPKPPHSPASRMSPSCSHPGT 256
WT V RAG YC T +G G + P H P P PGT
Sbjct: 999 WTG-VCRAGHYCKGGSTTPTPDDGVTGNVCPIGKHCPTGSSEPKDCAPGT 1047
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 318 RPKPPHSPASRMSPSCSHPGTEDMRPLLARGK*RKYHIQHPNSTLQQH 175
RP+ PH P P H E RPL + Q P+ L+ H
Sbjct: 7 RPQEPHRPQEPHRPLEPHRPQEPHRPLEPHRPLEPHRPQEPHRPLEPH 54
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 318 RPKPPHSPASRMSPSCSHPGTEDMRPLLARGK*RKYHIQHPNSTLQQH 175
RP+ H P P H E RPL ++ Q P TL+ H
Sbjct: 181 RPQESHRPLEPPRPQEPHRPQEPHRPLEPPRPQEQHRPQEPPKTLEPH 228
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 394 CWQSGHLLFCFTHRDMQQKWKLWLHSPQTTTQSCFPYESFLLSPWH 257
C+ +G L+F +H D + K+W H Q +C P + LL WH
Sbjct: 1221 CFNAGLLVFKPSHHDYEMIMKMWHHVSQ--VDAC-PNDQRLL--WH 1261
>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 399 ILVGRAGIYCSVLPTETCSRNGSYGYI-RPKPPHSPASRMSPSCSHPGTE 253
+L+G+A Y + P E ++G I P+ +P S ++ S PG++
Sbjct: 549 VLLGKAATYATEFPAEDPPKSGPVPPIPNPRSTQAPQSSVASSQHAPGSQ 598
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = -3
Query: 421 FPIRCMDHSCWQSGHLLFCFTHRDMQQKWKLWLHSPQTTTQSCFPYESFLLSPWHRRHAS 242
+P++ CW L C H ++ L L T+ + P++S++L W + H
Sbjct: 1164 YPVQPQSMPCWLYITLKQCLLHYPRERPTFLLLVDTLTSRK---PFDSWMLKHWKKIHND 1220
Query: 241 ITCTRQIAQ 215
+ + Q
Sbjct: 1221 VNVDFDVTQ 1229
>SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -3
Query: 286 YESFLLSPWHRRHASITCTRQIAQVSHSTSQLHIATAF 173
Y + SPW + + IT R+ V+H H+ F
Sbjct: 41 YAAAFNSPWKKEYRDITVLRRFGTVTHHHLSYHLVPLF 78
>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
Length = 837
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 346 QQKWKLWLHSPQTTTQSCFPY 284
QQ+ K WLH+P++ TQ+ Y
Sbjct: 14 QQEGKQWLHAPESLTQAAVLY 34
>SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)
Length = 144
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 346 QQKWKLWLHSPQTTTQSCFPY 284
QQ+ K WLH+P++ TQ+ Y
Sbjct: 14 QQEGKQWLHAPESLTQAAVLY 34
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 336 HFCCMSLWVKQNNR--CPLCQQEWSIQRMGK 422
H C+ W+ +N+ C +C+ E+ +QR K
Sbjct: 133 HVRCLEEWLSASNKNECEICKYEYHLQRTPK 163
>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
Length = 323
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 271 ARRTHTGSRTVWWFGANV 324
A + GS T WWFGAN+
Sbjct: 304 AGSANEGSTTQWWFGANL 321
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 337 WKLWLHSPQTTTQSCFPYESFLLSPWHR 254
WK W+H+ QT +SC P+ + PW R
Sbjct: 110 WK-WIHAHQTAQESC-PHCRDVYHPWCR 135
>SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)
Length = 367
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 327 HSFHFCCMSLWVKQNNRCPLCQQEW 401
++ H CC + + N +CP C++E+
Sbjct: 223 NTVHSCCSTCAKRVNRKCPECREEF 247
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 210 DTCAICRVQVM-DACLRCQGESKKDSYGKQDCVVVWGECNHSFHFC 344
D C CR +C C+ D+ CV + CNH+ C
Sbjct: 281 DVCTDCRNHTTGSSCQYCEPLYVGDARNNGSCVSCYHTCNHTATVC 326
>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -1
Query: 393 VGRAGI-YCSVLPTETC-SRNGSYGYIRPKPPHS---PASRMSPSCSHPGT 256
V R G+ C+ P TC + + S G + + H P S + CSHPGT
Sbjct: 474 VARLGVPTCARYPAYTCFNGSSSLGCRQARRMHGTTEPRSCSTTRCSHPGT 524
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 330 YGYIRPKPPHSPASRMSPSCSHPGTEDMRPLL 235
YGY RP PP PAS S G+++ + LL
Sbjct: 170 YGY-RPFPPKIPASEFEKLASAVGSKEDKDLL 200
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVK 365
CNH FH C+ W+K
Sbjct: 379 CNHDFHSKCIDRWLK 393
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 321 CNHSFHFCCMSLWVKQNNRCP 383
C HSF C S W++ + CP
Sbjct: 81 CMHSFCASCYSQWMEHSRDCP 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,271
Number of Sequences: 59808
Number of extensions: 407678
Number of successful extensions: 1166
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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