Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p22
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        31   0.81 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              30   1.9  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              29   3.3  
SB_3823| Best HMM Match : KE2 (HMM E-Value=4.4e-20)                    29   3.3  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   29   4.3  
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)                28   5.7  
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          28   7.5  
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)           28   7.5  
SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 339 RQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQ-KRMKNENQ 476
           R ++  L  R+D   NR + L   L+  + ++RDL Q+ + MK E++
Sbjct: 721 RNQSEELTERLDVAQNRLLSLQDVLSSRDESVRDLNQELQNMKEEHE 767


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 306  QSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQ 452
            + D+EH  + LR       SRI +L ++K   +  + E E  I +L+ +
Sbjct: 1780 RDDMEHRNKQLRDDVVNFQSRITELEHKKKKADEKIEEQEDEIHELLDK 1828


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 303 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNEN 473
           V+  L  +KQNL  ++   +   ++L   K   NH L +SE    +L   K ++N N
Sbjct: 100 VEGKLNRLKQNLEVESKRNVELKNELERLKCDFNHELIKSEKQASEL--SKALENNN 154


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +3

Query: 120  ELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYES-MAR 296
            EL+Q F   Q    E   T++ ++ + A   +++      + E+D +    + + S +AR
Sbjct: 2249 ELQQQFDARQAEFAERGYTVQRLEDE-ADNDKLRRDLAALRNEMDNMNAEKRDHMSELAR 2307

Query: 297  MFVQ-SDLEHIKQNLRQKTNTLISRIDDLNNR 389
               Q +DLE+  Q+ R++ + L   IDDL N+
Sbjct: 2308 AQPQIADLENKLQDAREQNSRLKIEIDDLRNK 2339


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 312  DLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI-QQKRMKNE 470
            DL++++  ++QK      + +DL+N    L+     SE  +RD++ +  ++K E
Sbjct: 998  DLDNLRNEIKQKEKQSKEKDEDLHNNLRDLSDERQTSELKVRDILNENNQLKKE 1051


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 375  DLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAESN 494
            DL       NH L+    N RD++  KR      PA +SN
Sbjct: 997  DLQEYDELTNHCLSSDADNNRDILDSKRGFENEVPAQDSN 1036


>SB_3823| Best HMM Match : KE2 (HMM E-Value=4.4e-20)
          Length = 159

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
 Frame = +3

Query: 147 QVLMIETKK-TIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQ 308
           Q L  E +K     ID Q +V  R Q+   L++      E+D +      Y+ +  + V+
Sbjct: 10  QQLQTELEKYKAHQIDLQKSVSTRQQLDAQLSENTVVKEELDKISSDGNVYKLIGPVLVK 69

Query: 309 SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 425
            DLE  KQ       T+  RID +N      +  +NE E
Sbjct: 70  QDLEEAKQ-------TVSKRIDYINGEIKRQDGMINEME 101


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 440
           +EH++  + +K  T  S    LNN K  L H ++E+   + D
Sbjct: 31  IEHVETRMSKKMGTSCSDYRALNNVKGVLGHVMDETLEGMAD 72


>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/79 (21%), Positives = 39/79 (49%)
 Frame = +3

Query: 234 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 413
           + +RE+ + PPGT   +   +  V+ ++   ++   Q TN  I+  DD+       N+  
Sbjct: 253 MVKRELGIRPPGTLLVKRFWQKIVKKEINGKQEQQLQMTNETIAD-DDIEFEDE--NNNG 309

Query: 414 NESESNIRDLIQQKRMKNE 470
           +  ++ I +L+  K++  +
Sbjct: 310 SVRDNAITELVSDKKLSGD 328


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 KQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAE 488
           ++ L++  NT     D+LN  K      +N  E+ +RDL + +  +  N  A+E
Sbjct: 382 REELKKLRNTSFGEKDELNQLKQSSAAVINSLEAKVRDL-ESRLSQRSNTSASE 434


>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 315 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAESN 494
           L+H  +   +K + L SR++DL +    L+H+L   E  I DL  + ++      AAE N
Sbjct: 140 LQHTIKLKDKKIDGLESRLEDLESANNKLHHSLKFKEEKISDL--EGQIDELESLAAEKN 197


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -2

Query: 406 WFKHTFRLFKSSMRLIN-VLVFCLKFCLICSKSD*TNILAIDS*VFVPGGSTSISR*VRF 230
           W K TF +F +++ L + + +  +   +I S+S   ++L+ D+ V VPG   +    V  
Sbjct: 14  WLK-TFHMFFNTILLFSGIAILAVGIWVITSRSQYNSLLSNDNYVTVPGLMIAAGCLVII 72

Query: 229 VCI 221
           VC+
Sbjct: 73  VCV 75


>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
 Frame = +3

Query: 81  LTTIIKMAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRM-QMHTNLTQREIDV 257
           LT +++     + E+ +A   +  +  E KK       ++ +L +M Q++  L  +E + 
Sbjct: 194 LTELLERLHCCEHEISRAKETIVCMKAERKKLKSE---KMELLSQMKQVYAILEDKESE- 249

Query: 258 LPPGTKTYESMAR---MFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESES 428
           L    K Y+   R   + +Q  L   +   R++ N+L   +DD+N +       L   ES
Sbjct: 250 LGEFIKNYQQHMRESEIKIQRLLSEKESWERERKNSL-QYLDDMNTQLRTKESQLAVVES 308

Query: 429 NIRDLIQQKRMKNENQPAAESN 494
            + ++ Q   +   N P+ ESN
Sbjct: 309 ELLEVKQHLTLLRLNAPSRESN 330


>SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)
          Length = 587

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 363 SRIDDLNNRKVCLNHTLNESES--NIRDLIQQKRMKNENQPAAE 488
           + +++L N   C+N + N+  +  N RD+  ++  KN+N+   E
Sbjct: 455 NELEELRNNDSCMNISENQDNASKNNRDVTSKRSSKNDNKSRQE 498


>SB_2961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 403 FKHTFRLFKSSMRLINVLVFCLKFCLICSKS 311
           +KH      SS RL +  +FCLKFC +  KS
Sbjct: 41  YKHEAGEKASSCRLCDDYLFCLKFCDLRIKS 71


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 384 NRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 491
           N +  +  TLN S+  +++  Q +RMK + + A E+
Sbjct: 107 NERAEIAETLNMSDDQVKNWFQNRRMKRKRKRAEET 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,358
Number of Sequences: 59808
Number of extensions: 296439
Number of successful extensions: 744
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)