Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p22
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07340.1 68415.m00841 prefoldin-related KE2 family protein co...    53   1e-07
At2g07340.2 68415.m00842 prefoldin-related KE2 family protein co...    48   5e-06
At1g29990.1 68414.m03668 prefoldin, putative similar to Swiss-Pr...    32   0.29 
At5g03660.1 68418.m00325 expressed protein low similarity to out...    30   1.2  
At3g09980.1 68416.m01198 expressed protein contains Pfam profile...    30   1.5  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    29   2.7  
At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / flor...    29   3.5  
At3g10880.1 68416.m01310 hypothetical protein                          29   3.5  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    27   8.1  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   8.1  
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    27   8.1  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    27   8.1  
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s...    27   8.1  

>At2g07340.1 68415.m00841 prefoldin-related KE2 family protein
           contains similarity to Swiss-Prot:O60925 prefoldin
           subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
           KE2 family protein
          Length = 128

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 55/114 (48%)
 Frame = +3

Query: 114 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 293
           D   + AF+++Q  MIE    ++ + +Q+      +    LT  E+  LP  T TY+S+ 
Sbjct: 3   DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62

Query: 294 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQK 455
           R FV      ++    QK     + +  L   K  L   + E E+N+R+L+QQ+
Sbjct: 63  RTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQE 116


>At2g07340.2 68415.m00842 prefoldin-related KE2 family protein
           contains similarity to Swiss-Prot:O60925 prefoldin
           subunit 1 [Homo sapiens]; contains Pfam domain, PF01920:
           KE2 family protein
          Length = 127

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 31/114 (27%), Positives = 55/114 (48%)
 Frame = +3

Query: 114 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 293
           D   + AF+++Q  MIE    ++ + +Q+      +    LT  E+  LP  T TY+S+ 
Sbjct: 3   DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62

Query: 294 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQK 455
           + FV      ++    QK     + +  L   K  L   + E E+N+R+L+QQ+
Sbjct: 63  K-FVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQE 115


>At1g29990.1 68414.m03668 prefoldin, putative similar to
           Swiss-Prot:O15212 prefoldin subunit 6 (Protein Ke2)
           [Homo sapiens]
          Length = 129

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +3

Query: 189 DHQLAVLGRMQMHTN-LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLIS 365
           +HQL     +Q+  N L  +E+D+L      Y+ +  + V+ DL     N+R++   + +
Sbjct: 30  NHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIGPVLVKQDLAEANANVRKRIEYISA 89

Query: 366 RIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 491
            +  L+     +   + E ++N R+ I + + + +   A ++
Sbjct: 90  ELKRLD----AILQDMEEKQNNKRETIMKLQQRLQTIQAGKA 127


>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +3

Query: 282 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 461
           ES     ++ +LE     +R++   +  +ID L+     L +T+ + E+  +D ++    
Sbjct: 75  ESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFNE 134

Query: 462 KNENQ 476
           KN+ +
Sbjct: 135 KNKEK 139


>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
           PF04949: Family of unknown function (DUF662)
          Length = 178

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/65 (20%), Positives = 31/65 (47%)
 Frame = +3

Query: 282 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 461
           E+     ++ +LE +   +R++   +  +ID +N     L HT+ + E   ++ ++    
Sbjct: 81  ETKRLALIREELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNE 140

Query: 462 KNENQ 476
           KN  +
Sbjct: 141 KNREK 145


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 261 PPGTKTYESMARMFVQ---SDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESN 431
           P G   Y ++A+ +     SD+  +   +R K    I+ +D+L N   CL   ++ +E+ 
Sbjct: 507 PVGAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCL---VSSAETA 563

Query: 432 IRDLIQ 449
           I +L Q
Sbjct: 564 IDELFQ 569


>At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / floral
           homeotic protein (AGL2) (SEP1) identical to
           developmental protein SEPALLATA1 / floral homeotic
           protein (AGL2 / SEP1) SP:P29382 from [Arabidopsis
           thaliana]
          Length = 251

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
 Frame = +3

Query: 99  MAKTVDLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREI---DVLPPG 269
           M KT+D   K ++  ++V     K+   +    L + GR + +    QR +   D+ P  
Sbjct: 63  MLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYE-NLQRQQRNLLGEDLGPLN 121

Query: 270 TKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 446
           +K  E + R    S    +KQ    KT  ++ ++ DL N++  L  T       + D+I
Sbjct: 122 SKELEQLERQLDGS----LKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMI 176


>At3g10880.1 68416.m01310 hypothetical protein
          Length = 278

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
 Frame = +3

Query: 102 AKTVDLELKQAFV-DLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKT 278
           A+ + +E ++ +V DL+  + ++   IE ++ +L  +      +     ++  +    K 
Sbjct: 118 ARNIAIETEKRYVVDLESKLSDSVYKIEKLESELDEVKECLGVSEAEVSKLMEMLSECKN 177

Query: 279 YESMARMFVQSDL-EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNI-RDLIQQ 452
            +S  +     DL + ++  LR +    I ++++  N+ +CLN T  +SES   ++++++
Sbjct: 178 EKSKLQTDNADDLLDSLRAELRSR-EIQIEQMEEYLNQVLCLNETEIKSESETDKNIVEE 236

Query: 453 KRMKNE 470
            R K E
Sbjct: 237 LRAKVE 242


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 399 LNHTLNESESNIRDLIQQKR---MKNENQ 476
           LN+ LN S+  +R L+ QKR   +KN +Q
Sbjct: 470 LNYRLNMSDGEVRKLVSQKRWDELKNSDQ 498


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 399 LNHTLNESESNIRDLIQQKR---MKNENQ 476
           LN+ LN S+  +R L+ QKR   +KN +Q
Sbjct: 503 LNYRLNMSDGEVRKLVSQKRWDELKNSDQ 531


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +3

Query: 153 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSD----LE 320
           ++I T   ++N+D  L   GRM  H  ++    +      K Y       +  +    LE
Sbjct: 349 IIIFTTNFVDNLDPALIRRGRMDYHIEMSYCRFEAFKVLAKNYLENESHDLYGEIGRLLE 408

Query: 321 HIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAESN 494
            +  +       L+ + D+ ++  +C    +   E   +  I+++  KN+ +  AE N
Sbjct: 409 EVDVSPADVAENLMPKSDE-DDADICFRRLVKSLEEEKKKKIEKEARKNKKK--AEDN 463


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
 Frame = +3

Query: 153 LMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMAR--MF--VQSDLE 320
           +++ T   ++ +D  L   GRM  H  ++  + +      K Y  +    ++  ++  LE
Sbjct: 365 IIVFTTNFVDKLDPALIRRGRMDNHIEMSYCKFEAFKVLAKNYLEIETHDLYGEIERKLE 424

Query: 321 HIKQNLRQKTNTLISRIDDLNNRKVCLNH---TLNESESNIRDLIQQKRMKNENQPA 482
               +      TL+ + D+  +  +C+     TL E +   R L +++  K   + A
Sbjct: 425 ETDMSPADVAETLMPKSDE-EDADICIKRLVKTLEEEKEKARKLAEEEEKKKAEKEA 480


>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
           similar to phenylalanine ammonia-lyase GB:S48726
           [Petroselinum crispum]
          Length = 707

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 237 TQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLN 416
           T   +D+L   + TY  +  +    DL H+++NL++   + +S++       V  N  L+
Sbjct: 492 TAEAVDILKLMSTTY--LVALCQAVDLRHLEENLKKAVKSAVSQVAK-RVLTVGANGELH 548

Query: 417 ESESNIRDLIQ 449
            S    RD++Q
Sbjct: 549 PSRFTERDVLQ 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,436
Number of Sequences: 28952
Number of extensions: 209442
Number of successful extensions: 464
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)