Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p21
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.75 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   4.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   4.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 306 SPVYSV-IMKLKKEVDINHGDSVVWKNIEM 392
           S +YSV ++ L K +++NH  + V  N+E+
Sbjct: 301 SKLYSVSVVSLDKSLEVNHISARVGDNVEI 330


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 86  PSGLCRTADPSAETKTTQANLEQEE 160
           P G+C T D   +T +T+  L++ +
Sbjct: 367 PPGVCYTCDVCGKTLSTKLTLKRHK 391


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 55  NNTVRMTSFNTLWTMSNSRSISRN 126
           NN       N LWT ++++ IS N
Sbjct: 289 NNVHYQGKENILWTQASAKGISDN 312


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 312 VYSVIMKLKKEVDINHGDSVVWK 380
           V SV+   KKEV    G  V W+
Sbjct: 108 VESVVETCKKEVTSTEGCEVAWQ 130


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 312 VYSVIMKLKKEVDINHGDSVVWK 380
           V SV+   KKEV    G  V W+
Sbjct: 82  VESVVETCKKEVTSTEGCEVAWQ 104


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 390 MASGPNSPVQTEQDIEDIFGDS 455
           M   P+   +  Q++++IFGDS
Sbjct: 364 MGCHPDIQEKVIQELDEIFGDS 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,595
Number of Sequences: 438
Number of extensions: 1644
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)