Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p21
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14710.1 68415.m01654 F-box family protein contains Pfam prof...    31   0.54 
At5g28160.1 68418.m03403 kelch repeat-containing F-box family pr...    29   1.3  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    27   6.7  

>At2g14710.1 68415.m01654 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 362

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 282 DKMNVKHHSPVYSVIMKLKKEVDINH--GDSVVWKNIEMASGPNSP 413
           D+ ++     V   I     E  INH  GD VVWKN    S PN P
Sbjct: 236 DRFSLLKQCMVTKKIEVFVTENKINHENGDDVVWKNFMTFSSPNLP 281


>At5g28160.1 68418.m03403 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 324

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 282 DKMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMA 395
           DK+++ H   ++  ++ L+K     HG   VW NIE A
Sbjct: 271 DKVDLSHDKDIWCAVIALEKR----HGSDEVWGNIEWA 304


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/70 (21%), Positives = 34/70 (48%)
 Frame = +3

Query: 270 KQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSVVWKNIEMASGPNSPVQTEQDIEDIFG 449
           +++  K + + HS  Y ++ + K +      D  ++  ++     +  +Q+  D+ED+F 
Sbjct: 13  RELPGKKHRRGHSIEYGILFRDKDD------DLALFSEMQDKERDSFLLQSSDDLEDVFS 66

Query: 450 DSLKTWDHFT 479
             LK +  FT
Sbjct: 67  TKLKHFSEFT 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,713
Number of Sequences: 28952
Number of extensions: 123486
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)