Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p20
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 175 3e-44
06_01_0189 + 1470006-1470989 173 6e-44
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 31 0.67
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 29 2.7
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 2.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 2.7
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 3.6
05_05_0149 - 22733703-22736216 28 6.2
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 6.2
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 8.2
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 27 8.2
04_04_1287 - 32390422-32391588,32392472-32392645 27 8.2
>06_01_1045 - 8241862-8242881
Length = 339
Score = 175 bits (425), Expect = 3e-44
Identities = 81/117 (69%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 408
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHFI
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFI 73
Query: 409 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYI 579
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYI
Sbjct: 74 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 130
>06_01_0189 + 1470006-1470989
Length = 327
Score = 173 bits (422), Expect = 6e-44
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWET-LKDSERHFI 408
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHF+
Sbjct: 2 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 61
Query: 409 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYI 579
HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYI
Sbjct: 62 SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 118
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 94 NLHSGINGENRVQTKSPMKNSVLATKNDNLTEEM-DLDKNFEEFDPQKEPLLRENPRRFV 270
++H R+ + P +N+V+ T++D+L E + D + + + E RENP
Sbjct: 45 DIHHTDPSVERLPVQLPFENNVIFTEDDDLEEVIEDPNSSTTKLTAWLEAN-RENPSARQ 103
Query: 271 IFPIQYPDIWQMYKKAEASFW 333
+ I+YP+ W + + +W
Sbjct: 104 LTYIEYPEHWTWHN--QGKYW 122
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 194 ISSVKLSFFVANTLFFMGDFVCTRFSPLIP 105
IS+ LS VA +L+ + F+CTR+ L P
Sbjct: 342 ISTTMLSCIVARSLYGLVSFLCTRYRGLTP 371
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -2
Query: 312 LVHLPYIGVLNREDDKAPRVLPQQRFLLWVEL-----FEIFIEVHFLSQIVIFRSQYTI 151
L+HL Y+G+++ K PR + +FL ++L E+ EV L+Q+V R+ + I
Sbjct: 769 LLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEI 827
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 514 HRNILPQ*LELLVKISQPSFHLQCHLKPQRKQGHA**NVSHYLLRFPSLINPWTNRLPRR 335
H ++ P L + +SQ SF + P H + H+ L PSLI PW RL +
Sbjct: 795 HPSLRP--LRTVSSLSQSSFEEYLDISPPSPTFHEK-HQQHFNLDPPSLIPPWQLRLAKT 851
Query: 334 SKTKLQLSCTFA 299
+ ++ CT +
Sbjct: 852 KENEI-YPCTLS 862
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +1
Query: 85 DKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDK----NFEEFDPQKE 237
D N S GE S KN +K + EEMDLDK EE DP+ E
Sbjct: 448 DMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKVAAEETDPENE 502
>05_05_0149 - 22733703-22736216
Length = 837
Score = 27.9 bits (59), Expect = 6.2
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 3/143 (2%)
Frame = +1
Query: 91 ENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDP-QKEPLLRENPRRF 267
E L G G +R + P + + + +T M+ + EE D QK+ L+ + + F
Sbjct: 103 EGLPMGSRGASRGTSPVPKRTQM----HRRITSHMNKENAQEEIDKLQKQILVLQTEKEF 158
Query: 268 VIFPIQYPDIWQMYKKAEASFWTVEE--VDLSKDLSDWETLKDSERHFIKHVLAFFAASD 441
+ Y Y E +++ L S ++D+E + A + D
Sbjct: 159 L--KTSYDSALGRYLDIEKQVVELQDEVCSLQDAFSTGAAIEDNEARALMAARAIVSCED 216
Query: 442 GIVNENLVERFSQEVQVTEARCF 510
+VN +R S E TE + F
Sbjct: 217 TLVNLQDQQRRSSEEARTEFKRF 239
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 187 EEMDLDKNFEEFDPQKEPLLREN 255
E +D++K+F +FD Q P+ R+N
Sbjct: 718 EFLDVEKDFSKFDIQHPPITRQN 740
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 244 LRENPRRFVIFPIQYPDIWQMYKKAEAS---FWTVEE 345
L+ +P+R V+ +Q PDI + K A+ +WT+++
Sbjct: 369 LQHDPQRMVLEALQQPDILGVVKHLAAAGFVYWTIDD 405
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 292 DIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIK--HVLAFFAASDGIVNE 456
DIWQ+ KA+ W E+ +K + ++LK++ + ++ H L+ DG NE
Sbjct: 1246 DIWQVLAKAKYQDW---EIHSTKRVWKMQSLKEACENALQEHHFLSGTLVGDGSTNE 1299
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 91 ENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFE 216
+N + + G + +++ P + LA DN TEE+D + E
Sbjct: 294 DNSNDALEGSHLGKSELPQWSPKLADSQDNSTEELDSTRQLE 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,978
Number of Sequences: 37544
Number of extensions: 300347
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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