Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p20
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 202 1e-52
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 199 2e-51
SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13) 69 4e-12
SB_39000| Best HMM Match : TolA (HMM E-Value=0.55) 32 0.30
SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5) 29 3.7
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092) 28 4.8
SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11) 28 4.8
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 27 8.5
>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 991
Score = 202 bits (494), Expect = 1e-52
Identities = 93/120 (77%), Positives = 103/120 (85%)
Frame = +1
Query: 220 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSER 399
F+ + EPLLRENP RFVI PIQYP+IWQMYKKAEASFWT EEVDLSKD D+ L D ER
Sbjct: 60 FNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDDER 119
Query: 400 HFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYI 579
F+ HVLAFFAASDGIVNENLVE F QEVQ+ EARCFYGFQIA+EN+HSEMYSLLI++ I
Sbjct: 120 MFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLI 179
>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 928
Score = 199 bits (485), Expect = 2e-51
Identities = 92/120 (76%), Positives = 102/120 (85%)
Frame = +1
Query: 220 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSER 399
F+ + EPLLRENP RFVI PIQY +IWQMYKKAEASFWT EEVDLSKD D+ L D ER
Sbjct: 77 FNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAKLNDHER 136
Query: 400 HFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYI 579
F+ HVLAFFAASDGIVNENLVE F QEVQ+ EARCFYGFQIA+EN+HSEMYSLLI++ I
Sbjct: 137 MFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLI 196
>SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)
Length = 241
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 220 FDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEAS 327
F+ + EPLLRENP RFVI PIQYP+IWQMYKKAEAS
Sbjct: 60 FNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEAS 95
>SB_39000| Best HMM Match : TolA (HMM E-Value=0.55)
Length = 576
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +1
Query: 163 ATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVE 342
A K ++ E+ L+ + + + + E L +E +R + Q D W +++ ++
Sbjct: 333 AKKRNDWLEQQRLEADSKRLEMEMEALAKEKVKRKEVHAKQV-DEWSRFEEE------LK 385
Query: 343 EVDLSKDLSDWETLKDSERH 402
+ D K L D E LKD ERH
Sbjct: 386 QRDAEKTLRDAEKLKDFERH 405
>SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 30.7 bits (66), Expect = 0.91
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +1
Query: 205 KNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETL 384
K E+D + E ++ + R + Q+ W++ ++ E E +L K LSD +
Sbjct: 38 KKIAEYDGEHEQMVHKLERYKCTYEEQHKSQWELRQREE------EISELQKALSDMQVY 91
Query: 385 KDSERHFIKHVLAFFAASDGIVNENLVER 471
ER +HVL +A +D + L +R
Sbjct: 92 LFQER---EHVLRLYAENDRLKIRELEDR 117
>SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 556 NTFQNEHFPWLSGSHRNILPQ*LELLVKISQPSFHLQCHLKPQRKQGHA 410
NT FP L S + LPQ ++ +F LQ HL+P ++QG++
Sbjct: 33 NTLDPSIFPLLYQSPKKDLPQ---FPIRTVPGAFCLQYHLRPLKQQGYS 78
>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
Length = 592
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 106 GINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEE 219
G GE+ +TKS K+ K+ EE DLDKN E
Sbjct: 386 GKRGESVGKTKSKDKDKESREKDKEKKEERDLDKNSSE 423
>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
Length = 783
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 100 HSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFD 225
HSG+ EN + + + S ND TE + D E FD
Sbjct: 108 HSGLTSENDISSPRKKRKSSHGATNDRATENLLRDLPPEAFD 149
>SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11)
Length = 1182
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 530 MAIWKP*KHLASVT*TSCENLSTKFSFTMPSEAAKKA 420
+++W + L S+T CEN++ F PS+A KA
Sbjct: 954 ISVWVITQQLTSITKPFCENIAALVVFYTPSKADMKA 990
>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 289 PDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKH 414
P++ Q YKKA +++ E ++ LSD E ++D+E+ + H
Sbjct: 198 PELAQGYKKAISAY---VEKGFARKLSDEERMEDTEQWLLPH 236
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 210 IFIEVHFLSQIVIFRSQYTIFHGRLRLHTVFTVDSAMKILFINSRSH--CLLPLNS 49
I + VH+ +++++ YTI L +H + V + + + N SH C++P+ S
Sbjct: 1146 IVLPVHYTNRVIVLPVHYTIGVIVLPVHYTYLV-IVLPVHYTNRVSHYPCIIPIAS 1200
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 289 PDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKH 414
P++ Q YKKA +++ E ++ LSD E ++D+E+ + H
Sbjct: 791 PELAQEYKKAISAY---VEKGFARKLSDEERVEDTEQWLLPH 829
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/117 (21%), Positives = 44/117 (37%)
Frame = +1
Query: 94 NLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVI 273
N H+ N T P N++L+ D ++ +KN E +KE +N
Sbjct: 64 NTHATSNTHATSNTPKPTSNTLLSKMADTSKDQKGQNKNEESIKIRKEKNEAKNSETSAA 123
Query: 274 FPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKHVLAFFAASDG 444
I + K E E +++++ + E + + H AF A S+G
Sbjct: 124 SEIAEKPKGRESKFEETMAQVGEFEEVNEEGTQQEKNEGDNGPLVTHGEAFSATSNG 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,123
Number of Sequences: 59808
Number of extensions: 363653
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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