Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p20
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 190 4e-49
At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm... 183 7e-47
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm... 169 2e-42
At1g51405.1 68414.m05786 myosin-related low similarity to nonmus... 32 0.24
At4g31880.1 68417.m04531 expressed protein 31 0.56
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 30 1.3
At5g46500.1 68418.m05726 expressed protein 29 3.0
At1g74390.1 68414.m08618 exonuclease family protein contains exo... 29 3.0
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 28 4.0
At5g37360.1 68418.m04488 expressed protein 28 5.2
At3g20350.1 68416.m02578 expressed protein 28 5.2
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 27 6.9
At4g11350.1 68417.m01831 fringe-related protein various hypothet... 27 6.9
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 9.1
At1g11540.1 68414.m01325 expressed protein contains Pfam profil... 27 9.1
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 190 bits (464), Expect = 4e-49
Identities = 88/117 (75%), Positives = 98/117 (83%), Gaps = 1/117 (0%)
Frame = +1
Query: 232 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 408
+EPLL P RF +FPI YP IW+MYKKAEASFWT EEVDLS+D DWE +L D ERHFI
Sbjct: 6 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFI 65
Query: 409 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYI 579
KHVLAFFAASDGIV ENL RF +VQV+EAR FYGFQIA+EN+HSEMYSLL+DTYI
Sbjct: 66 KHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYI 122
>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
chain / ribonucleotide reductase nearly identical to
SP|P50651 Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
subunit) {Arabidopsis thaliana}
Length = 341
Score = 183 bits (446), Expect = 7e-47
Identities = 84/125 (67%), Positives = 100/125 (80%)
Frame = +1
Query: 205 KNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETL 384
++ EE + + EPLL +RF +FPI+Y IW+MYKKAEASFWT EEVDLS D+ WE L
Sbjct: 10 RDMEEGESE-EPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEAL 68
Query: 385 KDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLL 564
DSE+HFI H+LAFFAASDGIV ENL RF +VQV EAR FYGFQIAMEN+HSEMYSLL
Sbjct: 69 TDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLL 128
Query: 565 IDTYI 579
++T+I
Sbjct: 129 LETFI 133
>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 231
Score = 169 bits (410), Expect = 2e-42
Identities = 77/108 (71%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
Frame = +1
Query: 232 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 408
+EP+L P RF +FPIQYP IW+MYKKAEASFWT EEVDLS+D DWE +L + ERHFI
Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFI 65
Query: 409 KHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEM 552
KHVLAFFAASDGIV ENL RF +VQ++EAR FYGFQIA+EN+HSE+
Sbjct: 66 KHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEI 113
>At1g51405.1 68414.m05786 myosin-related low similarity to nonmuscle
myosin heavy chain from Gallus gallus [GI:212449],
Xenopus laevis [GI:214624], Homo sapiens [GI:641958]
Length = 487
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 91 ENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFV 270
+NLHS + G R S K L + L EE+ + ++ +P+K L E+ +R +
Sbjct: 375 QNLHSSVEGWRRKALSSEAKLKNLQAEVCGLQEEIKRLRKEDKLEPEKNKLPSESEKRVL 434
Query: 271 I 273
I
Sbjct: 435 I 435
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 31.1 bits (67), Expect = 0.56
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 136 KSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKEPLLRENPRRFVIFPI--QYPDIWQMY 309
KS + N V A +ND+ + + D K ++ + EP +NPR + + PD+
Sbjct: 302 KSGVSNGV-AQQNDS-SVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359
Query: 310 KKAEASFWTVEEVDLSKDLSDWETLKDSERHFIKHVL 420
++ E +V++ DLSKD E + +E K VL
Sbjct: 360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVL 396
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 58 RQ*TMAPTVDKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDKNFEEFDPQKE 237
R+ + +D++N+H + KN+VL D +E+DLD+ +F+ E
Sbjct: 209 RELVVHKNMDEDNIHVSDMDDKDTMLMISDKNNVLPENLDEFDQELDLDQ-LLDFETNYE 267
Query: 238 PLLR 249
LL+
Sbjct: 268 SLLK 271
>At5g46500.1 68418.m05726 expressed protein
Length = 417
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 100 HSGINGENRVQTKSPMKNSVLATKNDNL---TEEMDLDKNFEEF 222
H+G +G+N V+T+ K++ D++ E+MD D + EE+
Sbjct: 277 HNGESGDNNVETERSTKHAAQRNYYDHVDIDIEQMDSDDDIEEW 320
>At1g74390.1 68414.m08618 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 506
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 257 RGALSSSLFN--TPIYGKCTRKLKLRFGPSRKSI 352
RG+L LF+ TP++ C LK+RFG SRK +
Sbjct: 334 RGSLRMKLFHNDTPLH-LCWHSLKVRFGISRKFV 366
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 161 NTLFFMGDFVCTRFSPLIPL*RFSLSTVG 75
+T+F F ++SPL+P F+LST G
Sbjct: 9 DTVFLFSRFAGAKYSPLLPSPSFTLSTSG 37
>At5g37360.1 68418.m04488 expressed protein
Length = 309
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -1
Query: 469 SQPSFHLQCHLKPQRKQGHA**NVSHYL-LRFPSLINPWTNRL----PRRSKTKLQLSCT 305
SQPSFH LKP + + H N+S L LRF + T L P LQLS
Sbjct: 26 SQPSFHFSSSLKPNKSKRH---NLSKSLTLRFALTESDSTKPLEIEEPSSKSLLLQLSKC 82
Query: 304 F 302
F
Sbjct: 83 F 83
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 289 PDIWQMYKKAEASFWTVEEVDLSKDLSDWETLKDSERH 402
PD+ + K ++ +T + + +D S WET+ SE H
Sbjct: 481 PDVNLINKGRHSNAFTDQNGEFEEDDSGWETVSHSEEH 518
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 397 SHYLL--RFPSLINPWTNRLPRRSKTKLQLSCTFAIYRGI 284
S+YL+ R+P WT+ +P ++T L + AIY I
Sbjct: 233 SYYLIADRYPHQGKTWTDAIPNFTETSLSIRYIAAIYWSI 272
>At4g11350.1 68417.m01831 fringe-related protein various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 489
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 283 QYPDIWQMYKKAEASFWTVEEVDLSKDLSDWETL 384
+Y IW KK W EEV + + D E+L
Sbjct: 108 EYIKIWYKPKKMRGYVWLDEEVKIKSETGDQESL 141
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 163 ATKNDNLTEEMDLDKNFEEFDPQKEPLLRENP 258
A + L+E + K+ E +PQ +PL +++P
Sbjct: 270 AERESKLSESPEAKKDSEHLEPQSKPLQQQSP 301
>At1g11540.1 68414.m01325 expressed protein contains Pfam profile:
PF01925 domain of unknown function DUF81
Length = 367
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 71 WLLLLIKRIFIAESTVKTVCKRSRP*KIVYW 163
WL+L + +F+A ST+KT CK+ + YW
Sbjct: 74 WLVLFLFAVFLAWSTMKT-CKKG----VSYW 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,296
Number of Sequences: 28952
Number of extensions: 257388
Number of successful extensions: 783
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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