Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p19
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         34   0.099
08_01_0534 - 4635122-4635380,4635716-4635837                           32   0.53 
11_06_0480 - 24081075-24081723,24083427-24084202                       29   4.9  
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    28   6.5  
05_06_0278 + 26894802-26895362                                         28   8.6  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    28   8.6  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   SGSAAGLCQGTRVQRDRPNMWLGSRGPGATAG 99
           +  AAG CQ  R +R    +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 6   GQRSGTVPGYPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTGRATDVTR 155
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG A + TR
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 127 QRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVP 17
           +RP  ++ RR  S  + + PA+C GGRV      +VP
Sbjct: 62  RRPHLLSLRRPSSSSSSSVPASCGGGRVDGDLTASVP 98


>05_05_0303 -
           23958989-23960563,23962628-23962864,23963250-23963449,
           23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  AQRDCARVPACNATAPTCGWGRVGPVRRPAASSDV 115
           +Q D  +V + +  A TC WGR   VRR    SD+
Sbjct: 480 SQSDEMKVDSEDKPAGTCKWGRAFSVRRRKKLSDI 514


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 12  RSGTVPGYPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLDDSRP 173
           RSG  P  P++ RP   +AGV      GR    T      G +T     DD +P
Sbjct: 75  RSGGAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGSTKPLSDDDGKP 128


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -1

Query: 100 RRPSHRAHATPATCWGGRVARGYPG---TVPLR 11
           R P  RA + PAT  G R +R  PG   +VP R
Sbjct: 224 RSPGRRADSVPATASGERASRQQPGKMVSVPAR 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,544,698
Number of Sequences: 37544
Number of extensions: 335915
Number of successful extensions: 1087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)