Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p17
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       50   1e-08
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +1

Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
           IK  G+   T +Q  A+P ++ GRDL+  A+TGSGKT AF +P I+ +
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTL 258


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 QKTDSNPEPEKDIEALNNEKEAK--KRVVQDGDTN 228
           +K + NP+P+  + ALN  K     K V Q G T+
Sbjct: 26  KKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTH 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 473 LIPKRVGSHTVPSSAVNF*SDSIP 402
           L+P+ +  HT P S +   + ++P
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLP 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 357 GKKIEQRFTWIKPLLRYTIRSKIHCT 434
           GKKI   F  ++PL+ +   S ++ T
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRT 265


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 501 DSS*SYTSFVGRQGSCGCCQNWLWKNTSILNTGYRPYIQIK 623
           D   ++ S+V    +     NWLW          R YI+IK
Sbjct: 51  DKGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYIEIK 91


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 541 DLVGAAKTGSGKTLAFLIPAIDLIYKLKF 627
           D+   A TG G  ++  + AIDL   L +
Sbjct: 174 DIAVNATTGKGGLVSLAVQAIDLANTLVY 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,530
Number of Sequences: 438
Number of extensions: 1793
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)