Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p17
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 91 6e-19
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 88 4e-18
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 68 6e-12
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 66 1e-11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 65 4e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 63 2e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 57 8e-09
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 57 8e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 56 2e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 55 3e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 3e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 8e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 1e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 53 1e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 1e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 53 1e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 53 2e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 53 2e-07
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 53 2e-07
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 53 2e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 2e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 52 2e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 52 2e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 3e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 52 4e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 4e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 51 6e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 51 6e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 51 6e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 51 7e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 51 7e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 1e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 49 2e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 49 2e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 49 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 49 3e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 49 3e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 48 5e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 48 5e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 7e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 48 7e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 47 9e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 47 1e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 2e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 46 2e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 46 2e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 46 2e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 2e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 46 2e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 46 2e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 45 5e-05
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 44 8e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 40 0.001
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 40 0.001
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 40 0.001
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.002
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 32 0.27
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 30 1.1
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 30 1.5
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 1.9
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 29 3.4
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 7.8
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/74 (56%), Positives = 61/74 (82%)
Frame = +1
Query: 406 ILSDQKFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLA 585
I++++ F +L ++ + T IK+MGF MT+IQAKAIPPL+ G D++GAA+TGSGKTLA
Sbjct: 150 IMTNKTFESL--SLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLA 207
Query: 586 FLIPAIDLIYKLKF 627
FLIPA++L+Y++KF
Sbjct: 208 FLIPAVELLYRVKF 221
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/75 (56%), Positives = 61/75 (81%)
Frame = +1
Query: 403 GILSDQKFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTL 582
GI+++ F +L+ + E T + IK+MGF MT+IQA +I PLLEG+D++GAA+TGSGKTL
Sbjct: 84 GIMTNVTFDSLD--LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTL 141
Query: 583 AFLIPAIDLIYKLKF 627
AFLIPA++L++K +F
Sbjct: 142 AFLIPAVELLFKERF 156
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 67.7 bits (158), Expect = 6e-12
Identities = 31/67 (46%), Positives = 49/67 (73%)
Frame = +1
Query: 418 QKFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 597
+KF L + + T G+KD ++ MT++Q+ AIP L GRD++GAA+TGSGKTLAF+IP
Sbjct: 71 RKFAQLP--ISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIP 128
Query: 598 AIDLIYK 618
++ +++
Sbjct: 129 ILEKLHR 135
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = +1
Query: 457 TLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
TL GI+D GF TMT +Q +P +L+G+D++ AKTG+GKT+AFL+P+I+ + K
Sbjct: 91 TLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIK 144
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 457 TLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
+L IKD GF TMT +Q +P +L+G+D++ AKTG+GKT+AFL+PAI+ + K
Sbjct: 393 SLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIK 446
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/54 (48%), Positives = 42/54 (77%)
Frame = +1
Query: 457 TLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
+L IKD G+ TMT +Q +P +L+G+D++ AKTG+GKT+AFL+P+I+++ K
Sbjct: 65 SLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVK 118
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 57.2 bits (132), Expect = 8e-09
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
L I +GF T IQA+ P L+GRDL+G A+TGSGKTLA+L+PA+
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 57.2 bits (132), Expect = 8e-09
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
L I +GF T IQA+ P L+GRDL+G A+TGSGKTLA+L+PA+
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +1
Query: 454 PTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDL 609
P L +KD G + T IQ + +P +L GRD++G A TGSGKTL F++P I L
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +1
Query: 454 PTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
P L +K+ G + T IQ + +P +L GRD++G A TGSGKTL F++P I
Sbjct: 156 PVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
+K GF T IQ++ P ++GRDL+G A+TGSGKTL++L+PAI
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
+K G + IQ + P +EGRD++G A+TG+GKTLAF IP ID I K
Sbjct: 131 LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +1
Query: 463 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
L I+ ++ T +Q AIP LLEGRDL+ A+TGSGKT AF P I I K
Sbjct: 172 LNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMK 223
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
IK + T IQ +A+P +L GRD++G AKTGSGKT AF++P I
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 421 KFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPA 600
+F+ L+ + E + + GF T +QA+ IP L +D+V A TGSGKTLAFL+P
Sbjct: 15 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 74
Query: 601 IDLI 612
I++I
Sbjct: 75 IEII 78
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 421 KFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPA 600
+F+ L+ + E + + GF T +QA+ IP L +D+V A TGSGKTLAFL+P
Sbjct: 16 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 75
Query: 601 IDLI 612
I++I
Sbjct: 76 IEII 79
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = +1
Query: 436 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
+G V E L ++++GF+ T+IQ +A+P L GRD + A+TGSGKTL +L+ LI
Sbjct: 80 QGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLI 138
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 430 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 597
+ E T P LL + GF T IQA++ P ++GRD+V AKTGSGKTL +LIP
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 430 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 597
+ E T P LL + GF T IQA++ P ++GRD+V AKTGSGKTL +LIP
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 430 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 597
+ E T P LL + GF T IQA++ P ++GRD+V AKTGSGKTL +LIP
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIP 215
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 427 TALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAID 606
T +E + P L + +G+ T IQA IP L GRDL +A TGSGKT AF +P ++
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 607 -LIYKLK 624
L+++ K
Sbjct: 228 RLLFRPK 234
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
+ G + IQ + P +EGRD++G A+TG+GKTLAF IP ID I K
Sbjct: 119 LSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 436 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIY 615
E + TL + G + MT +Q + L+G+D + AKTG+GK++AFL+PAI+ +
Sbjct: 379 ESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVL 438
Query: 616 K 618
K
Sbjct: 439 K 439
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +1
Query: 496 TEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIY 615
T IQ AIP +LEG+D+V AKTGSGKTLA+L+P + ++
Sbjct: 70 TLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLF 109
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +1
Query: 436 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIY 615
E + TL + G + MT +Q + L+G+D + AKTG+GK++AFL+PAI+ +
Sbjct: 332 ESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVL 391
Query: 616 K 618
K
Sbjct: 392 K 392
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 424 FTALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPA 600
+ E + P +L + GF + T IQA+ P L+ RD+V AKTGSGKTL +LIPA
Sbjct: 434 YITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPA 493
Query: 601 IDLI 612
L+
Sbjct: 494 FILL 497
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +1
Query: 502 IQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
IQ+ P LL+GRDL+G AKTGSGKTLAF IPAI + K
Sbjct: 140 IQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLK 178
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
L+GI + GF + IQ ++IP L GRD++ AK G+GKT AF IP ++ I
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
L+GI + GF + IQ ++IP L GRD++ AK G+GKT AF IP ++ I
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI 193
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
+K + + IQA+A+P ++ GRD +G AKTGSGKTL F++P +
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 455
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +1
Query: 427 TALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAID 606
T E V E + + +G+ ++IQA+A+P LEG+D++G A+TGSGKT AF IP +
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 607 LI 612
+
Sbjct: 70 AL 71
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAID 606
IK G+ T IQ K +P +L G D+V A+TGSGKT AFLIP ++
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 448 CEPTLL-GIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYKLK 624
CE +L + ++GF T IQ +AIP LL GR+ A TGSGKT AF+ P ++ KLK
Sbjct: 148 CEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICP---MLIKLK 204
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 478 MGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
MGF T +QA+AIP +L GRD++ A TG+GKT+A+L P I
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +1
Query: 463 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
L I+ ++ T +Q AIP L GRDL+ A+TGSGKT AF P I I K
Sbjct: 159 LNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMK 210
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
+K + + IQ +A+P ++ GRD +G AKTGSGKTL F++P +
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 472 KDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
K++G T +Q +P +L GRD++G A+TGSGKT AF +P +
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
LL ++ G+ T IQ +AIP L G+ L+ +A TGSGKT +FL+P I
Sbjct: 122 LLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 463 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAID 606
+ ++D GF + QA IP +L G+D++ AA+TGSGKT +L P ID
Sbjct: 93 IALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +1
Query: 463 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
L I+ ++ T +Q AIP LL RDL+ A+TGSGKT AF P I I K
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK 215
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +1
Query: 463 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIYK 618
L I+ ++ T +Q AIP LL RDL+ A+TGSGKT AF P I I K
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK 215
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +1
Query: 409 LSDQKFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAF 588
L++ +F+ LE + + + F T +QA IP L +D+ A TGSGKTLAF
Sbjct: 11 LTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAF 70
Query: 589 LIPAIDLI 612
++P ++++
Sbjct: 71 VVPLVEIL 78
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 436 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLIY 615
E + L ++ G+ + IQ AIP L+ RD++G A+TGSGKT AF++P + I
Sbjct: 317 ESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYIS 376
Query: 616 KL 621
+L
Sbjct: 377 RL 378
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +1
Query: 481 GFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
GF T++Q+ A+P +++G D V + TGSGKTLA+L+P + I
Sbjct: 129 GFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEI 172
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAID 606
+K G + IQA +L+G DLVG A+TG GKTLAF++P ++
Sbjct: 111 LKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE 156
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1
Query: 481 GFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 597
GF + IQA++ P ++ RD+V AKTGSGKTL +LIP
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP 286
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1
Query: 469 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
++ G + IQ + P L+GRD++ AKTG+GKTLAF IP I
Sbjct: 117 LEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPII 161
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
L GI + GF + IQ ++IP L G D++ AK G+GKT AF IP ++ I
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
L GI + GF + IQ ++IP L G D++ AK G+GKT AF IP ++ I
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 451 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
E + +K+ F IQA A P+++G+ + A ++GSGKTLA+L+P I
Sbjct: 383 EDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 460 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
L GI + GF + IQ ++IP L G D++ AK G+GKT AF IP ++ I
Sbjct: 166 LRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKI 216
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 451 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
+ L G+ D G+ +EIQ +A+ P+L+GRD++ A++G+GKT I ++
Sbjct: 31 DKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIV 84
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 451 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
E + ++++ TEIQ IP ++E + +V + TGSGKTLA+L+P + L+
Sbjct: 121 EEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLM 174
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +1
Query: 451 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKT 579
E L G+ + GF + IQ +A+ P+L+GRD++ A++G+GKT
Sbjct: 44 EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKT 86
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 451 EPTLL-GIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
+P LL I D GF +E+Q + IP + G D++ AK+G GKT F++ + I
Sbjct: 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI 108
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 451 EPTLL-GIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDLI 612
+P LL I D GF +E+Q + IP + G D++ AK+G GKT F++ + I
Sbjct: 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI 108
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 421 KFTALEGTVCEPTLL-GIKDMGFITMTEIQAKAIP-PLLEGRDLVGAAKTGSGKTLAFLI 594
+F+A P L+ I + F T+IQ +G+D++GAA+TGSGKTLAF +
Sbjct: 188 EFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGL 247
Query: 595 PAI 603
P +
Sbjct: 248 PIL 250
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1
Query: 511 KAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
+AIP L G+ L+ +A TGSGKT +FL+P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 481 GFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
G ++ Q +A+ + +D + A TGSGK+L F IPA+
Sbjct: 165 GISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPAL 205
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 505 QAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
Q +AI ++ GRD TG GK++ + IPA+
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPAL 73
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +1
Query: 409 LSDQKFTALEGTVC-EPTLL-GIKDMGFITMTEIQA----KAIPPLLEGRDLVGAAKTGS 570
+S+ + AL+ C P L +++MG ++ +Q + I P RD+ + TGS
Sbjct: 14 VSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGS 73
Query: 571 GKTLAFLIPAIDLI 612
GKTL++ +P + L+
Sbjct: 74 GKTLSYALPIVQLL 87
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 481 GFITMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIDL 609
G+ + + Q +AI +L G + TG+GK+L + IPA+ L
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMIL 308
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 148 PEPEKDIEALNNEKEAKKRVVQDGDTNG 231
PE EKDIE ++EK+ K V QD + +G
Sbjct: 528 PESEKDIEVADSEKD--KEVPQDDEMDG 553
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 505 QAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 603
Q + I ++ GRD++ G GK+L + +PA+
Sbjct: 94 QKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAM 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,971
Number of Sequences: 28952
Number of extensions: 152070
Number of successful extensions: 478
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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