Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p16
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    28   7.8  

>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 467 EACSPAGVKWLLKPIEIKNNLQRKCRPPH 553
           E C P  +   + P  ++  LQ K  PPH
Sbjct: 68  ERCPPLAILQTIAPFSVRCKLQAKLMPPH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,512
Number of Sequences: 37544
Number of extensions: 299461
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)