Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p16
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 377 DYVVRIFLLNDYMNIILPLQFFFIANIT 460
           D V  +F+ N+Y+N++ P  F    N+T
Sbjct: 617 DSVELLFINNNYINLVRPNTFTDKVNLT 644


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/30 (26%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 203 LECFLNVYQ-VFISFAAVKYWLNVSARLPF 289
           + C++NVY  V +++A   +++++ + LP+
Sbjct: 69  MSCWMNVYYIVILAWAIFYFFMSMRSELPW 98


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 515 IKNNLQRKCRPPHREMSSKVSAPPFNL 595
           ++NNL+ + +  +REM  + S P  +L
Sbjct: 384 MENNLRGETQSNYREMEKRQSVPANDL 410


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 209 CFLNVYQVFISFAAVKY 259
           CF+ V+   + +AAV Y
Sbjct: 311 CFVFVFAALLEYAAVNY 327


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 629 G*WYLPCAGSH 661
           G WYLP  G H
Sbjct: 238 GKWYLPSGGCH 248


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 230 LDIHLRNTPNLYLFFSSHCIQP 165
           LDI    TPNL  +F+S    P
Sbjct: 822 LDITTPPTPNLLRYFASIATNP 843


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,504
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)