Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p15
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    42   7e-05
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    32   0.053
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.50 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.65 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    29   0.65 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    29   0.65 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   1.5  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   1.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.0  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    27   2.6  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   4.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.1  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   8.1  

>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 274 LEEDAYVEGIAKIIQRDFFPDLEKLNAQ 357
           LEED Y+EG++ IIQ+ +FPDL KL A+
Sbjct: 30  LEEDDYIEGLSYIIQQQYFPDLPKLKAE 57


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 572 VISAVLSLVAFFVCLGASSLLVAGVHGRSMFGVSKVAGVLYGSVGGLF 429
           V+S+V S+V   +CLG + L         +FG S VAG +Y    G F
Sbjct: 83  VVSSVQSIV--LICLGYTCLKEVNAFPDKLFGYSVVAGDIYALTAGYF 128


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 331  PDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNT 459
            P LEK N +N+  E  EN+  +   E T++   N  P EP NT
Sbjct: 2192 PALEKYNLENQKKEILENESKE---EETRQPEVNIQPEEPINT 2231


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 459 GVIWFCRWSVPAILLS*FSKSLIVFVFC 376
           G IWFC WS+ +   S ++KS+I+F  C
Sbjct: 118 GYIWFCIWSLIS-GFSYYAKSVIMFDVC 144


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 295 EGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLREL 411
           E I K+I++   PDLE +   +EYL   E K   ++REL
Sbjct: 355 EHITKLIEQQIKPDLESMLIISEYL--NEYKPSPKMREL 391


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 382 NKDYQRLRELTQ-KYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDK 558
           +K YQR R   Q KY GN  P E   T  +  TP      +PAT      R T N ++D 
Sbjct: 105 HKVYQRGRGAKQSKYLGNGKPIEASQTEESSSTPP-----SPATKKSSKQRLTMN-SRDA 158

Query: 559 TAD 567
             D
Sbjct: 159 ALD 161


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +1

Query: 340 EKLNAQNEYLEATENKDYQRLRELT-----QKYSGNRPPTEPYNTPA-TFDTPNIDRPCT 501
           ++L + NE L +  +++ ++L+EL      Q     R   E ++  A   D P    PCT
Sbjct: 346 KELASSNELLASVRDENTKKLKELQDIIEEQSKHMARLHREGFSEAAENNDKPKETMPCT 405

Query: 502 PATNNEDAPRQTKNATKDK 558
             ++  D    T N +KDK
Sbjct: 406 YDSSLADDHSDTSNLSKDK 424


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 361 EYLEATENKDYQRLRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTK 540
           EY+E    K  Q+  E   K +  +P   P N P  F+T  I R      N   AP +T+
Sbjct: 62  EYIE----KQRQKKLEKMAKKAARKPIAPPSNAPPEFNTDFIKREMLSIPNY--APFETE 115

Query: 541 NATKDKT 561
            +  D T
Sbjct: 116 KSALDIT 122


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 274 LEEDAYVEG-IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYS 426
           LEE+A +   + K+ +     DLE LN  N  +EA +++    ++E TQ+ S
Sbjct: 411 LEENALLSHKVLKLTEE--IQDLETLNQLNTEIEARQSEKLNEVQEETQRLS 460


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 557 LSLVAFFVCLGASSLLVAGVHGRSMFGVS 471
           LS+V FF CL A+  L    H    FG+S
Sbjct: 28  LSVVLFFNCLAATLYLHGYKHSSVFFGIS 56


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 301 IAKIIQRDFFPDLEKLNAQNEY--LEATENKDYQRLRELTQKYSGNRPPTEPYNTPAT 468
           +A+   +D FP +EKL  ++E   L    ++D ++  E+     G+ PP  P  TPA+
Sbjct: 244 LARETFKDEFPMIEKLLREDEEGNLWFHASEDAKKFAEVY----GHSPPASPSRTPAS 297


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 282 RCLCGGHSKNYSKRFLP*P 338
           +C CG HSK Y    LP P
Sbjct: 372 KCYCGLHSKTYPCSSLPSP 390


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 126 TNIIKNVSWRKRYEAWRGSI 185
           TN+  +V WR + E+ RG++
Sbjct: 427 TNVTGSVDWRSKLESQRGAV 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,942
Number of Sequences: 5004
Number of extensions: 44738
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)