Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p15
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0178 + 17594062-17595576 49 3e-06
07_01_0692 + 5240429-5240548,5241354-5241512 31 0.51
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 31 0.67
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 29 2.7
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 3.6
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 28 4.7
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 28 4.7
11_04_0354 + 16697571-16700256,16700335-16700759 28 6.2
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182... 28 6.2
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628... 27 8.2
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 27 8.2
01_05_0760 - 24977608-24978708 27 8.2
>06_03_0178 + 17594062-17595576
Length = 504
Score = 48.8 bits (111), Expect = 3e-06
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Frame = +1
Query: 274 LEEDAYVEGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTE-- 447
L+ED YV + +II+RDFFPDL +L + ++L+A ++D LR+ K R +
Sbjct: 58 LDEDTYVAAVERIIERDFFPDLPRLRDRLDWLQALRSRDPLVLRDAQLKILERRRRAQRQ 117
Query: 448 ----PYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDN 579
P TP + + P AT P + D+ AD+ D+
Sbjct: 118 RQGGPVPTPTPATSTALRSPSFLAT-----PSVAPSVAGDEGADVDDD 160
>07_01_0692 + 5240429-5240548,5241354-5241512
Length = 92
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 578 LSVISAVLSLVAFFVCLGASSLLVAGVHGRSMFGVSKVAGVLYGSVG 438
L +I +SL F CL + +L V GR+M + + GV+YG G
Sbjct: 39 LMIIVTGVSLGVFVTCLVLAFVLDLTVEGRAMVVFTALVGVVYGVAG 85
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 409 LTQKYSGNRPPTEPYNT---PATFDTPNIDRPCTPATNNEDAPRQTKNATKD 555
L + SG+ PT + T P TFD+ +D TP ++ +A Q++ +T++
Sbjct: 639 LQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSNAKEQSQGSTRN 690
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = +1
Query: 460 PATFDTPNIDRPCTPATNNEDAP---RQTKNATKDKTA 564
PA TP RP TP P RQT N+T D A
Sbjct: 134 PARSSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAA 171
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 430 NRPPTEPYNTPATFDTPNIDRPCTPATNNEDAPRQTKNATKDKTADITDN 579
N PP P TP T P TP N AP T T N
Sbjct: 292 NLPPLYPEPTPVTMPDPTTTTTPTPFMNPVTAPTMPSPVTNPATTPAVTN 341
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 534 LSGSILIVGSRSARPVNVWRVKSGWGVIW 448
L +ILIVG S + W VK+ WG W
Sbjct: 284 LDHAILIVGYGSEGGKDYWIVKNSWGESW 312
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 581 WLSVISAVLSLVAFFVCLGASSLLVAGVHGR--SMFGVSKVA-GVLYGSVGG 435
W SV +A +L F+ +G ++ G+H R SM+ + A V GS GG
Sbjct: 16 WRSVAAAAAALALLFLSVGVPLAVLLGLHQRFPSMYLADESAVSVFGGSEGG 67
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 579 VISNICGFVFSGIFCLSGSILIVGSRSARPVNV 481
V+SN+ GFVF+G L G I +G PV++
Sbjct: 606 VLSNMTGFVFNGNLGLCGGIPELGLPPCPPVSM 638
>07_01_0248 -
1821340-1821996,1823619-1823761,1824239-1824453,
1825911-1826049,1826152-1826385,1826504-1826624
Length = 502
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 581 WLSVISAVLSLVAFFVCLGASSLLVAG 501
WLS+++AV+SL + LG S +AG
Sbjct: 211 WLSIVAAVMSLAYSTIGLGLSIAKIAG 237
>02_04_0211 +
20957553-20957828,20957944-20958258,20962094-20962801,
20963362-20963609,20963758-20964101,20964200-20964236,
20964270-20964575,20965281-20965347,20965498-20965626
Length = 809
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 195 EAVES*DYCVQSTKNTQTE-VREEEQGFRGRCLCGGHS 305
EA+E C +S +N + E FRGRC+ G S
Sbjct: 193 EAMEGMRKCARSFRNAPLRFIAEHHAVFRGRCVVGNRS 230
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 569 ISAVLSLVAFFVCLGA--SSLLVAGVHGRSMFGVSKVAGVLYGSVGG 435
++A L F +G SSL GVH S+F A V GS GG
Sbjct: 13 VAAAGVLAPAFAAVGVHGSSLATVGVHASSLFAAGDHADVDGGSGGG 59
>01_05_0760 - 24977608-24978708
Length = 366
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 436 PPTEPYN-TPATFDTPNIDRPCTPATNNEDA 525
PP PY TP T+ P +D P P A
Sbjct: 68 PPPSPYFCTPCTYQRPKLDAPGRPRRRRRSA 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,772
Number of Sequences: 37544
Number of extensions: 265440
Number of successful extensions: 779
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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