Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p15
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 567 ICGFVFSGIFCLSGSILIVG 508
           +C FV   +F +SG +++VG
Sbjct: 177 LCVFVAGVVFIVSGLLMLVG 196


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -2

Query: 534 LSGSILIVGSRSARPVNVWRVKSGWGVIWFCRWS 433
           LSG  L +     R + +W    GW +     W+
Sbjct: 158 LSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWN 191


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = -2

Query: 534 LSGSILIVGSRSARPVNVWRVKSGWGVIWFCRWS 433
           LSG  L +     R + +W    GW +     W+
Sbjct: 34  LSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWN 67


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +1

Query: 400 LRELTQKYSGNRPPTEPYNTPATFDTPNIDRPCTPAT 510
           L  L   Y  N+ PT    TP    T  + R   P +
Sbjct: 41  LENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVS 77


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 578 LSVISAVLSLVAFFVCLGA 522
           L V+ +++ +++FF C GA
Sbjct: 55  LIVLGSIIFVISFFGCCGA 73


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 534 LSGSILIVGSRSARPVNVWRVKSGWGV 454
           LSG  L +     R + +W    GW +
Sbjct: 124 LSGKPLSINGALIRIIAIWLFSLGWTI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,395
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)