Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p13
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 35 0.012
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 33 0.028
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 30 0.26
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 29 0.60
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 2.4
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 2.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 5.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 5.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 5.6
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 7.4
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 7.4
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 25 7.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 7.4
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 25 9.7
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 25 9.7
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.7
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.7
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 9.7
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.7
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 34.7 bits (76), Expect = 0.012
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +2
Query: 98 PTEDDPSTCTSEPSMSCDKKNPISEEIEEELQ-----FHNDYFKTEREERISLNNSFRSV 262
P P PS+S D + +SE++ ++ F DY + + + SL ++ +S
Sbjct: 233 PMNSPPLDMEPLPSISMDASDSVSEQLVKDASLPSGPFSTDYLENGSDLKRSLGHNQKSD 292
Query: 263 RSAKTTEPSHSLDSTKTRHGSLRYDFKSSASL 358
R +K P H + + + +F SS +L
Sbjct: 293 RVSKDVSPQHQANPSTLNNPLKTQNFDSSKNL 324
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 33.5 bits (73), Expect = 0.028
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Frame = +2
Query: 155 KNPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPSHSLDS----TKTRHG 322
K P E+++ L +ND + + ++ +NN S S+ ++E H+LD+ + H
Sbjct: 37 KTPSDYELDDVLDLYNDTTEDDADDADDVNNYIMSPSSSLSSESEHALDALVYPIYSHHN 96
Query: 323 SLRYDFKSS-ASLEQVSY----RCLVNNNKVDKRKVRYRSSVTYSLSLELSCFI 469
L ++ S AS+ ++ C N V Y S SL + + F+
Sbjct: 97 ILEHENNSDYASITPSNHPAFTSCAYLQNPVVDSNNEYESKFRLSLEIPPTDFL 150
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 30.3 bits (65), Expect = 0.26
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 521 KVCFSEHSSYSHMFVCDHASC 583
K CF + SY M CD+A+C
Sbjct: 229 KYCFCQQGSYGQMVACDNANC 249
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 29.1 bits (62), Expect = 0.60
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 156 RIQYPKKSKKNCSSTTITSRPREKNGSV*IIRSVQFVQRKRPNRVIRSIRLRRGTVASDM 335
+I YP +KK T + R KNG + S+ +Q+K RS R R V +++
Sbjct: 29 QIYYPSTAKKAQLITLFSKLRRAKNGLI----SMTELQQKNVPPSSRSPRRRVAGVTNNV 84
Query: 336 TLRVPPRWSRSLID 377
T R+ + +++D
Sbjct: 85 TARISSKRKINMVD 98
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +2
Query: 104 EDDPSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTE 283
++ S T +P +K + + + FH + + + + FR+V +
Sbjct: 106 QNGKSRDTEKPPSMKEKDLSSNSSSQHDKAFHERVDQGKNKSSTTKYQEFRTVADYREFS 165
Query: 284 PSHSLDSTKTRHGSLRYDFKSSASLE 361
P S++S K G KSS S E
Sbjct: 166 PGQSVNSLKPNSGDEVPSTKSSTSSE 191
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 128 SEPSMSCDKKNPISEEIEEELQFHNDYF 211
S+PS+S K N +EE+E+E + +D F
Sbjct: 442 SDPSVSSIKGNKTNEELEKEFKSTSDNF 469
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 106 RRPVDMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRER 225
++ ++ + + L+++E NIRR+ ++ AVP ++RER
Sbjct: 392 KKAAEIKREEINSLKRREENIRRHSKKGAVPYE--KERER 429
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 127 QRTEHELRQKESNIRRNR----RRTAVPQRLLQDRERRTDQSK*FVPFSSFSENDRTESF 294
Q+TEH +RQKE + R R ++ ++ + + +T + K + F + E + +
Sbjct: 704 QKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRI 763
Query: 295 AR 300
R
Sbjct: 764 ER 765
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 86 KEASPTEDDPSTCTSEPSMSCDKKNP 163
K++SP+E PS C+ E C K P
Sbjct: 229 KDSSPSEK-PSCCSQEKKSCCSSKKP 253
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/84 (21%), Positives = 34/84 (40%)
Frame = +2
Query: 110 DPSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPS 289
+PS ++S + + E + N ++ ERI + R V + T +P
Sbjct: 236 NPSYVYKNTNVSDPDEGNMYTSTEGNTEAVNVFYYDPTVERILTCDCVRPVYTIYTDDPD 295
Query: 290 HSLDSTKTRHGSLRYDFKSSASLE 361
S D K +G+ + SS ++
Sbjct: 296 SSFDIIKNNNGTFTFVESSSGEIQ 319
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 FHN-DYFKTEREERISLNNSFRSVRSAKTTEPSHSL 298
FHN D TE +E S NN R V S ++ E S S+
Sbjct: 799 FHNPDLTDTEIQET-SFNNDLRPVASIQSAETSRSV 833
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 158 NPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPSHSLD 301
N S ++E E++ YF+ E RIS+ ++++ K +E LD
Sbjct: 660 NSFSPDVESEVE---SYFQALYERRISIGKIVLTLQNFKKSENPRDLD 704
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 95 SPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKTEREERIS-LNNSFRSVRSA 271
+P D S + +P + K EIE+EL+ K R S S V+
Sbjct: 290 TPFNSD-SNISIDPKDNNSNKQDHFAEIEDELRQQFLDIKVGRANASSPRRKSISIVKPH 348
Query: 272 KTTEPSHSLDSTKTRHGSLRYDFK 343
+ P HS ++ ++ G DF+
Sbjct: 349 GISSPKHSTNNLSSKSGKFHSDFR 372
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 113 PSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPSH 292
P+ T + K P E++ ++ K + R+ NNS V S K TE H
Sbjct: 103 PAIETHASTSDVANKKPKKEKLPYKVIHAAHLTKPQLRFRVQPNNSREFVWSWKLTEKPH 162
Query: 293 SL 298
SL
Sbjct: 163 SL 164
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 321 VASDMTLRVPPRWSRSLIDASLITTKSI 404
++ DM PR+ SLIDASL TK I
Sbjct: 205 ISKDMGSYNLPRFLASLIDASLNDTKEI 232
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 149 DKKNPISEEIEEELQFHNDYFKTEREE 229
D+K EE+E+E Q+ YF E+E+
Sbjct: 155 DRKPRTLEEMEKEAQWLKGYFSEEQEK 181
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 272 KTTEPSHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNN 391
+ SH+L STK+ +G+ + SA L + +NN
Sbjct: 204 RANSASHNLGSTKSPNGNAKESLSRSAELPSKAKPMEINN 243
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 125 TSEPSMSCDKKNPISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTT 280
T S SC+ + S ++ + K E +E S N F+S SA +
Sbjct: 84 THNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSYKNEFKSSSSASVS 135
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRE 222
D EHE+ + N T VP LLQ+ E
Sbjct: 201 DEENNKEHEIEMTWVGVETNGIHTPVPDELLQEAE 235
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 120 VDGSSSVGEASFELELDETSRVSQ 49
+ GSS +GEA F L L ++ Q
Sbjct: 358 IHGSSEIGEAEFNLNLQLLEKILQ 381
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 176 IEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPSHSLDSTKTRHGSLRYDFKSSAS 355
+E+E Q N + + + RSVR + SH S +T D++ +A
Sbjct: 112 LEDENQIFNAEMAVRGSQSLQRRPTGRSVRGSMRRLSSHRSKSMRTSKSKKSGDYERTAE 171
Query: 356 LEQVS 370
E+ +
Sbjct: 172 NEEAA 176
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 591 YIKQDAWSQTNMWE*LECSE--KQTLLKNEGKQNK 493
++ + AWS+ WE E E + LL+ EG NK
Sbjct: 254 FLNEGAWSEIKAWE-REAGENTEPKLLRFEGNANK 287
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 164 ISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAK 274
I E E+EL +NDYF + IS N + +S RS K
Sbjct: 786 IKEIKEKELNTYNDYFNS----AISENPTLKSDRSEK 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,376
Number of Sequences: 5004
Number of extensions: 46820
Number of successful extensions: 194
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -